makefile

## makefile automates the build and deployment for python projects


## Configuration
#
# project type
PROJ_TYPE =		python
PROJ_MODULES =		git python-resources python-cli python-doc python-doc-deploy markdown
INFO_TARGETS +=		appinfo
PIP_ARGS +=		--use-deprecated=legacy-resolver

# build config
DATA_DIR ?=		data
ADD_CLEAN +=		*.log
ADD_CLEAN_ALL +=	$(OUTPUT_DIR) $(DATA_DIR)/{note,sid}

# project
OUTPUT_DIR =		notes


## Includes
#
include ./zenbuild/main.mk


## Targets
#
.PHONY:			appinfo
appinfo:
			@echo "app-resources-dir: $(RESOURCES_DIR)"

# load the pseudo token replacement lists into SQLite (new file)
.PHONY:			load
load:
			@make "PY_CLI_ARGS=load" pycli

# use the medical API to parse a sentence, which lazy downloads needed models
.PHONY:			primemedparser
primemedparser:
			mednlp show 'I died of liver disease.'

# write all result tables/config
.PHONY:			results
results:
			./src/bin/stats.py save
			make -C deid results
			find . -name \*.xlsx -exec mv {} ~/Desktop \;
			( cd src/bin ; ./maskex.py )

# stop the dump by killing matching processes
.PHONY:			stop
stop:
			ps -eaf | grep python | grep -v grep | grep cpbert | \
				awk '{print $$2}' | xargs kill

.PHONY:			vaporize
vaporize:		cleanall
			rm -fr $(DATA_DIR) pseudo-source