From f51d87da183dc9284e84b6e77f887306dd265ef0 Mon Sep 17 00:00:00 2001
From: Christian Tabedzki <35670232+tabedzki@users.noreply.github.com>
Date: Mon, 21 Sep 2026 12:33:16 -0400
Subject: [PATCH] chore: remove legacy requirements.txt

pyproject.toml has been the source of truth since 13bd56ff ("Transitioned
to pyproject.toml"). Nothing in the repo reads requirements.txt: the
README instructs `uv sync`, the Dockerfile does `pip install -e .`, and no
script or notebook references it. It has also drifted from pyproject.toml
(scanreader points at atlab/ instead of the BrainCOGS/ fork, icalevents is
missing), so keeping it around only invites installing the wrong set.

Assisted-by: ClaudeCode:claude-opus-5
---
 requirements.txt | 28 ----------------------------
 1 file changed, 28 deletions(-)
 delete mode 100644 requirements.txt

diff --git a/requirements.txt b/requirements.txt
deleted file mode 100644
index 21f407a5..00000000
--- a/requirements.txt
+++ /dev/null
@@ -1,28 +0,0 @@
-fair-research-login
-datajoint
-six
-scipy
-scikit-image
-python-dotenv
-datajoint
-element-calcium-imaging @ git+https://github.com/BrainCOGS/element-calcium-imaging.git
-element-array-ephys @ git+https://github.com/BrainCOGS/element-array-ephys.git
-element-interface @ git+https://github.com/datajoint/element-interface.git
-#ecephys_spike_sorting @ git+https://github.com/AllenInstitute/ecephys_spike_sorting.git
-ecephys_spike_sorting @ git+https://github.com/jenniferColonell/ecephys_spike_sorting.git
-scanreader @ git+https://github.com/atlab/scanreader.git
-pandas
-numpy
-astropy
-jupyterlab
-bitstring
-suite2p
-cellpose
-scp
-paramiko
-psutil
-tifffile
-tables
-openpyxl
-# matlab
-# matlabengineforpython