pyproject.toml

[build-system]
build-backend = "setuptools.build_meta"
requires = [ "setuptools>=82.0.1", "setuptools-scm>=8" ]

[project]
name = "ome-iris"
description = """\
  Open bioimage dataset catalog for benchmarking image IO, transformations, metadata management, and bioimage-linked \
  workflows.\
  """
readme = "README.md"
authors = [ { name = "Dave Bunten" } ]
requires-python = ">=3.11"
classifiers = [
  "Programming Language :: Python :: 3 :: Only",
  "Programming Language :: Python :: 3.11",
  "Programming Language :: Python :: 3.12",
  "Programming Language :: Python :: 3.13",
  "Programming Language :: Python :: 3.14",
]
dynamic = [ "version" ]
dependencies = [
  "pandas>=3.0.3",
  "pillow>=10",
  "pyyaml>=6.0.3",
]
scripts.ome-iris = "OME_IRIS.cli:main"

[dependency-groups]
dev = [
  "pre-commit>=4.2",
  "pytest>=9.0.3",
  "ruff>=0.11",
]
docs = [
  "myst-nb>=1.3",
  "pydata-sphinx-theme>=0.18",
  "sphinx>=9.0.4",
]

[tool.setuptools]
packages = [ "OME_IRIS", "ome_iris" ]
package-dir = { "" = "src", ome_iris = "src/OME_IRIS" }
include-package-data = true
package-data."*" = [
  "data/*.csv",
  "data/*.yaml",
  "data/datasets/*.yaml",
]

[tool.setuptools_scm]
version_scheme = "guess-next-dev"
local_scheme = "node-and-date"
write_to = "src/OME_IRIS/_version.py"

[tool.ruff]
# OME_IRIS is an intentional uppercase package name mirrored by a lowercase
# `ome_iris` alias (see [tool.setuptools] packages above).
lint.ignore = [ "N999" ]
# Declare both names explicitly: isort's directory-based first-party
# detection is filesystem case-sensitivity dependent, and `ome_iris` only
# resolves as a real path on case-insensitive filesystems (e.g. macOS).
lint.isort.known-first-party = [ "OME_IRIS", "ome_iris" ]

[tool.pytest]
ini_options.pythonpath = [ "src" ]
ini_options.addopts = [ "-q" ]