diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml new file mode 100644 index 0000000..acc1086 --- /dev/null +++ b/.github/workflows/ci.yml @@ -0,0 +1,29 @@ +name: ci + +on: + push: + branches: [main] + pull_request: + +jobs: + test: + runs-on: ubuntu-latest + timeout-minutes: 10 + steps: + - uses: actions/checkout@v4 + - uses: astral-sh/setup-uv@v3 + with: + enable-cache: true + - name: Set up Python + run: uv python install 3.11 + - name: Sync deps + run: uv sync --extra dev --extra ot + - name: Lint + run: uv run ruff check src tests scripts + - name: Format check + run: uv run ruff format --check src tests scripts + - name: Pyright + run: uv run pyright + continue-on-error: true + - name: Test + run: uv run pytest -q -m "not slow" diff --git a/.gitignore b/.gitignore index 982335e..ece8f3e 100644 --- a/.gitignore +++ b/.gitignore @@ -10,4 +10,40 @@ __pycache__/ .pyright/ .DS_Store *.orbax-checkpoint-tmp* -.env* \ No newline at end of file +.env* + +# Build / dist +/build/ +/dist/ +*.whl + +# Coverage +.coverage +.coverage.* +coverage.xml +htmlcov/ + +# IDE +.vscode/ +.idea/ +*.swp +*.swo + +# Jupyter +.ipynb_checkpoints/ + +# Logs +*.log + +# Python tooling +.python-version +.tox/ +.nox/ + +# GCP credentials — never commit service-account keys +*-credentials.json +*-key.json +service-account*.json +gcp-key*.json +.gcloud/ +application_default_credentials.json diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..989f559 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,15 @@ +repos: + - repo: https://github.com/astral-sh/ruff-pre-commit + rev: v0.6.9 + hooks: + - id: ruff + args: [--fix] + - id: ruff-format + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.6.0 + hooks: + - id: trailing-whitespace + - id: end-of-file-fixer + - id: check-yaml + - id: check-added-large-files + args: ["--maxkb=1024"] diff --git a/AGENTS.md b/AGENTS.md index f419fae..3b04b82 100644 --- a/AGENTS.md +++ b/AGENTS.md @@ -15,6 +15,22 @@ - Tests: `uv run pytest -q`. Mark slow paths with `@pytest.mark.slow`. - No emojis or decorative comments. Comments only when *why* is non-obvious. +## Make targets + +- `make setup` / `make setup-all` — sync deps (core / + hf, teacher, gcp). +- `make fmt` / `make lint` / `make type` / `make test` — the usual. +- `make smoke` — `scripts/smoke_all_methods.sh`. +- `make matrix-local` — run the paper matrix on CPU fixtures + aggregate. +- `make teacher-data` — generate the full replay shards (needs API keys). +- `make docker-cpu` / `make docker-tpu` — build deploy images locally. + +## `deploy/` boundary + +Anything under `deploy/` is launchers, Dockerfiles, and Cloud Build config — **no +algorithm code**. The CPU image runs CI smoke; the TPU image is the actual training +target. `deploy/launch_tpu.sh` and `deploy/launch_vertex.py` are the only entry +points; both honor a `DRY_RUN=1` env to print the underlying `gcloud` invocations. + ## Common workflows Generate teacher data into a replay shard: diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..bb65625 --- /dev/null +++ b/Makefile @@ -0,0 +1,51 @@ +.PHONY: setup fmt lint type test smoke matrix-local matrix-tpu teacher-data clean docker-cpu docker-tpu + +UV ?= uv +PY ?= $(UV) run python +OUT ?= artifacts/results/smoke +SEEDS ?= 2 +BACKEND ?= local_nano +TASKS ?= math + +setup: + $(UV) sync --extra dev --extra ot + +setup-all: + $(UV) sync --extra dev --extra ot --extra hf --extra teacher --extra gcp + +fmt: + $(UV) run ruff format src tests scripts + +lint: + $(UV) run ruff check src tests scripts + +type: + $(UV) run pyright + +test: + $(UV) run pytest -q -m "not slow" + +test-all: + $(UV) run pytest -q + +smoke: + bash scripts/smoke_all_methods.sh + +matrix-local: + $(PY) scripts/run_paper_matrix.py --backend $(BACKEND) --tasks $(TASKS) --seeds $(SEEDS) --out $(OUT) + $(PY) scripts/aggregate_results.py $(OUT) --base B3 --out $(OUT)/table.md + +matrix-tpu: + bash deploy/launch_tpu.sh + +teacher-data: + bash scripts/gen_all_teacher_data.sh + +docker-cpu: + docker build -f deploy/Dockerfile.cpu -t cts:cpu . + +docker-tpu: + docker build -f deploy/Dockerfile.tpu -t cts:tpu . + +clean: + rm -rf artifacts/results/smoke artifacts/runs .pytest_cache .ruff_cache diff --git a/README.md b/README.md index 77378fa..0cab884 100644 --- a/README.md +++ b/README.md @@ -17,6 +17,38 @@ JAX · Flax NNX · Optax · Orbax · OTT-JAX (entropic / unbalanced Sinkhorn) · `LocalModelAPI` — the smoke / unit-test path (nano-LM, optional HF Flax). Lets every loss and method run on a laptop. `ScaleBackendAdapter` — the sharding-aware path. Two impls: `TunixAdapter` (M8) and `MaxTextAdapter` (M9). Methods are written against one side or the other; we deliberately do **not** force them through a single protocol. +## Run the paper + +The full experiment matrix (B0–B5 × {gsm8k, apps} × seeds) is driven by one script: + +```bash +# Local CPU smoke (fixtures, 2 seeds, math only) +make matrix-local # → artifacts/results/smoke/table.md + +# Real run (after generating teacher data) +make teacher-data # honors $TEACHER, $TRAIN_LIMIT, etc. +uv run python scripts/run_paper_matrix.py \ + --backend tunix --tasks both --seeds 5 \ + --max-steps 2000 --out artifacts/results/paper/ +uv run python scripts/aggregate_results.py \ + artifacts/results/paper/ --base B3 --out artifacts/results/paper/table.md +``` + +The matrix orchestrator asserts the fairness fingerprint matches across cells before +launching a single training job (see `cts.train.fairness.assert_consistent`). + +## Deploy to GCP + +See [deploy/README.md](deploy/README.md). TL;DR: + +```bash +gcloud builds submit --config deploy/cloudbuild.yaml . # build + push images +PROJECT=… ZONE=… TPU_NAME=… IMAGE_TAG=… GCS_BUCKET=… \ + bash deploy/launch_tpu.sh # reserve TPU + run matrix +``` + +`DRY_RUN=1` prints the `gcloud` invocations without executing. + ## Quickstart ```bash diff --git a/deploy/Dockerfile.cpu b/deploy/Dockerfile.cpu new file mode 100644 index 0000000..bb9a1c5 --- /dev/null +++ b/deploy/Dockerfile.cpu @@ -0,0 +1,23 @@ +# CPU image — used by CI smoke and Vertex eval jobs. +FROM python:3.11-slim + +ENV PYTHONUNBUFFERED=1 \ + PIP_NO_CACHE_DIR=1 \ + UV_SYSTEM_PYTHON=1 + +RUN apt-get update && apt-get install -y --no-install-recommends \ + git curl ca-certificates build-essential \ + && rm -rf /var/lib/apt/lists/* + +RUN pip install --no-cache-dir uv==0.4.18 + +WORKDIR /workspace +COPY pyproject.toml uv.lock README.md ./ +COPY src ./src +COPY tests ./tests +COPY scripts ./scripts + +RUN uv sync --frozen --extra dev --extra ot --extra teacher --extra gcp + +ENV PATH="/workspace/.venv/bin:${PATH}" +CMD ["bash"] diff --git a/deploy/Dockerfile.tpu b/deploy/Dockerfile.tpu new file mode 100644 index 0000000..e50a96c --- /dev/null +++ b/deploy/Dockerfile.tpu @@ -0,0 +1,20 @@ +# TPU image — used for actual training runs on Cloud TPU VMs. +# Base matches Tunix's required JAX/libtpu pin; bump together when upgrading JAX. +FROM us-docker.pkg.dev/cloud-tpu-images/jax-stable-stack/tpu:jax0.4.34-rev1 + +ENV PYTHONUNBUFFERED=1 \ + PIP_NO_CACHE_DIR=1 + +RUN pip install --no-cache-dir uv==0.4.18 + +WORKDIR /workspace +COPY pyproject.toml uv.lock README.md ./ +COPY src ./src +COPY scripts ./scripts +COPY deploy ./deploy + +# --extra scale pulls Tunix; --extra ot pulls OTT-JAX for the OT backend. +# Use --inexact-resolve so JAX from the base image isn't replaced. +RUN uv pip install --system -e ".[ot,scale,gcp,teacher]" + +CMD ["python", "-m", "cts.train.main"] diff --git a/deploy/README.md b/deploy/README.md new file mode 100644 index 0000000..ccad66b --- /dev/null +++ b/deploy/README.md @@ -0,0 +1,66 @@ +# Deploying CTS to GCP + +Five commands. Nothing here runs automatically — invoke when you're ready. + +## 0. One-time setup + +```bash +gcloud auth login +gcloud config set project $PROJECT +gcloud artifacts repositories create cts \ + --repository-format=docker --location=us-central1 +gsutil mb gs://my-cts-runs +``` + +## 1. Build & push images + +```bash +gcloud builds submit --config deploy/cloudbuild.yaml \ + --substitutions=_TAG=$(git rev-parse --short HEAD) . +``` + +Pushes both `…/cts/cpu:` and `…/cts/tpu:`. + +## 2. Launch the paper matrix on a TPU + +```bash +PROJECT=my-proj ZONE=us-east5-a TPU_NAME=cts-run-1 \ +IMAGE_TAG=$(git rev-parse --short HEAD) GCS_BUCKET=gs://my-cts-runs \ +TPU_TYPE=v5p-8 bash deploy/launch_tpu.sh +``` + +Use `DRY_RUN=1` to print the `gcloud` invocations without executing. + +Alternative (Vertex AI, with managed retries + Tensorboard): + +```bash +uv run python deploy/launch_vertex.py \ + --project $PROJECT --region us-central1 \ + --image us-central1-docker.pkg.dev/$PROJECT/cts/tpu:latest \ + --bucket gs://my-cts-runs --tpu-type v5litepod-8 \ + -- --tasks both --seeds 5 --max-steps 2000 +``` + +## 3. Pull & aggregate results + +```bash +gsutil -m rsync -r gs://my-cts-runs/runs/cts-run-1/ artifacts/results/cts-run-1/ +uv run python scripts/aggregate_results.py artifacts/results/cts-run-1/ \ + --base B3 --out artifacts/results/cts-run-1/table.md +``` + +## 4. Tear down + +```bash +gcloud alpha compute tpus queued-resources delete cts-run-1 \ + --project=$PROJECT --zone=$ZONE --force +``` + +## Notes + +- No Terraform / GKE / secrets manager intentionally. A single SA + manual + `gcloud auth` is enough for this research repo. +- The TPU image base pin (`jax0.4.34-rev1`) must match the Tunix `[scale]` + extra. Bump them together. +- Algorithm code never lives under `deploy/`; this dir is launchers + Dockerfiles + only. diff --git a/deploy/cloudbuild.yaml b/deploy/cloudbuild.yaml new file mode 100644 index 0000000..f5e2848 --- /dev/null +++ b/deploy/cloudbuild.yaml @@ -0,0 +1,40 @@ +# Build + push CPU and TPU images to Artifact Registry. +# Trigger: gcloud builds submit --config deploy/cloudbuild.yaml . +substitutions: + _REGION: us-central1 + _REPO: cts + _TAG: ${SHORT_SHA} + +steps: + - id: build-cpu + name: gcr.io/cloud-builders/docker + args: + - build + - -f + - deploy/Dockerfile.cpu + - -t + - ${_REGION}-docker.pkg.dev/${PROJECT_ID}/${_REPO}/cpu:${_TAG} + - -t + - ${_REGION}-docker.pkg.dev/${PROJECT_ID}/${_REPO}/cpu:latest + - . + - id: build-tpu + name: gcr.io/cloud-builders/docker + args: + - build + - -f + - deploy/Dockerfile.tpu + - -t + - ${_REGION}-docker.pkg.dev/${PROJECT_ID}/${_REPO}/tpu:${_TAG} + - -t + - ${_REGION}-docker.pkg.dev/${PROJECT_ID}/${_REPO}/tpu:latest + - . + - id: push-cpu + name: gcr.io/cloud-builders/docker + args: [push, --all-tags, "${_REGION}-docker.pkg.dev/${PROJECT_ID}/${_REPO}/cpu"] + - id: push-tpu + name: gcr.io/cloud-builders/docker + args: [push, --all-tags, "${_REGION}-docker.pkg.dev/${PROJECT_ID}/${_REPO}/tpu"] + +options: + machineType: E2_HIGHCPU_8 +timeout: 1800s diff --git a/deploy/gcs_sync.py b/deploy/gcs_sync.py new file mode 100644 index 0000000..c9ea0a8 --- /dev/null +++ b/deploy/gcs_sync.py @@ -0,0 +1,57 @@ +"""Upload a local directory to GCS. Used at the end of a training run. + +Wired into ``cts.train.main`` via the ``--gcs-bucket`` flag and into +``deploy/launch_tpu.sh`` for post-run sync. Falls back to ``gsutil -m rsync`` +if ``google-cloud-storage`` isn't installed. +""" + +from __future__ import annotations + +import argparse +import shutil +import subprocess +from pathlib import Path + + +def upload(local_dir: str, gcs_uri: str) -> None: + """Recursively upload ``local_dir`` → ``gcs_uri`` (must start with ``gs://``).""" + if not gcs_uri.startswith("gs://"): + raise ValueError(f"gcs_uri must start with gs://, got {gcs_uri!r}") + src = Path(local_dir) + if not src.exists(): + raise FileNotFoundError(src) + + try: + from google.cloud import storage # type: ignore[import-not-found] + except ImportError: + if shutil.which("gsutil") is None: + raise SystemExit( + "Need google-cloud-storage (`uv pip install .[gcp]`) or gsutil on PATH." + ) from None + subprocess.run(["gsutil", "-m", "rsync", "-r", str(src), gcs_uri], check=True) + return + + bucket_name, _, prefix = gcs_uri[len("gs://") :].partition("/") + client = storage.Client() + bucket = client.bucket(bucket_name) + n = 0 + for path in src.rglob("*"): + if not path.is_file(): + continue + rel = path.relative_to(src).as_posix() + blob = bucket.blob(f"{prefix.rstrip('/')}/{rel}" if prefix else rel) + blob.upload_from_filename(str(path)) + n += 1 + print(f"[gcs_sync] uploaded {n} files to {gcs_uri}") + + +def main() -> None: + ap = argparse.ArgumentParser() + ap.add_argument("local_dir") + ap.add_argument("gcs_uri") + args = ap.parse_args() + upload(args.local_dir, args.gcs_uri) + + +if __name__ == "__main__": + main() diff --git a/deploy/launch_tpu.sh b/deploy/launch_tpu.sh new file mode 100755 index 0000000..527f1f0 --- /dev/null +++ b/deploy/launch_tpu.sh @@ -0,0 +1,56 @@ +#!/usr/bin/env bash +# Reserve a Cloud TPU queued resource and run the paper matrix on it. +# Required env: PROJECT, ZONE, TPU_NAME, IMAGE_TAG, GCS_BUCKET. +# Optional: TPU_TYPE (default v5p-8), RUNTIME (default v2-alpha-tpuv5), +# MATRIX_ARGS (default --tasks both --seeds 5 --max-steps 2000). +set -euo pipefail + +: "${PROJECT:?set PROJECT}" +: "${ZONE:?set ZONE, e.g. us-east5-a}" +: "${TPU_NAME:?set TPU_NAME}" +: "${IMAGE_TAG:?set IMAGE_TAG (the SHORT_SHA pushed by cloudbuild)}" +: "${GCS_BUCKET:?set GCS_BUCKET, e.g. gs://my-cts-runs}" + +TPU_TYPE=${TPU_TYPE:-v5p-8} +RUNTIME=${RUNTIME:-v2-alpha-tpuv5} +REGION=${REGION:-us-central1} +IMAGE="${REGION}-docker.pkg.dev/${PROJECT}/cts/tpu:${IMAGE_TAG}" +MATRIX_ARGS=${MATRIX_ARGS:---backend tunix --tasks both --seeds 5 --max-steps 2000} +DRY=${DRY_RUN:-0} + +run() { + echo "+ $*" + if [[ "$DRY" != "1" ]]; then "$@"; fi +} + +run gcloud alpha compute tpus queued-resources create "${TPU_NAME}" \ + --node-id="${TPU_NAME}" \ + --project="${PROJECT}" \ + --zone="${ZONE}" \ + --accelerator-type="${TPU_TYPE}" \ + --runtime-version="${RUNTIME}" + +# Wait for ACTIVE. +if [[ "$DRY" != "1" ]]; then + until gcloud alpha compute tpus queued-resources describe "${TPU_NAME}" \ + --project="${PROJECT}" --zone="${ZONE}" \ + --format='value(state.state)' | grep -q ACTIVE; do + echo "waiting for TPU…"; sleep 20 + done +fi + +REMOTE_CMD="docker run --rm --privileged --net=host \ + -e GCS_BUCKET=${GCS_BUCKET} \ + -e RUN_ID=${TPU_NAME} \ + ${IMAGE} \ + python scripts/run_paper_matrix.py ${MATRIX_ARGS} \ + --out /tmp/results && \ + python deploy/gcs_sync.py /tmp/results ${GCS_BUCKET}/runs/${TPU_NAME}/" + +run gcloud compute tpus tpu-vm ssh "${TPU_NAME}" \ + --project="${PROJECT}" --zone="${ZONE}" --command="${REMOTE_CMD}" + +echo +echo "Results: ${GCS_BUCKET}/runs/${TPU_NAME}/" +echo "To delete the queued resource:" +echo " gcloud alpha compute tpus queued-resources delete ${TPU_NAME} --project=${PROJECT} --zone=${ZONE} --force" diff --git a/deploy/launch_vertex.py b/deploy/launch_vertex.py new file mode 100644 index 0000000..78b0eed --- /dev/null +++ b/deploy/launch_vertex.py @@ -0,0 +1,77 @@ +"""Submit the paper matrix as a Vertex AI CustomJob with a TPU worker pool. + +Use when you want managed retries, Tensorboard, and structured logs instead of +the bare ``gcloud ssh`` path in ``launch_tpu.sh``. + +Usage:: + + python deploy/launch_vertex.py \\ + --project my-proj --region us-central1 \\ + --image us-central1-docker.pkg.dev/my-proj/cts/tpu:latest \\ + --bucket gs://my-cts-runs --tpu-type v5litepod-8 \\ + -- --tasks both --seeds 5 --max-steps 2000 + +Args after ``--`` are forwarded to ``scripts/run_paper_matrix.py``. +""" + +from __future__ import annotations + +import argparse +import sys +import time + + +def main() -> None: + ap = argparse.ArgumentParser() + ap.add_argument("--project", required=True) + ap.add_argument("--region", default="us-central1") + ap.add_argument("--image", required=True) + ap.add_argument("--bucket", required=True, help="gs:// prefix for results + staging") + ap.add_argument("--tpu-type", default="v5litepod-8") + ap.add_argument("--display-name", default=f"cts-matrix-{int(time.time())}") + args, matrix_args = ap.parse_known_args() + if matrix_args and matrix_args[0] == "--": + matrix_args = matrix_args[1:] + + try: + from google.cloud import aiplatform + except ImportError: + sys.exit("Install with `uv pip install -e .[gcp]` first.") + + aiplatform.init(project=args.project, location=args.region, staging_bucket=args.bucket) + + cmd = [ + "python", + "scripts/run_paper_matrix.py", + "--backend", + "tunix", + "--out", + f"{args.bucket}/runs/{args.display_name}/", + *matrix_args, + ] + + job = aiplatform.CustomJob( + display_name=args.display_name, + worker_pool_specs=[ + { + "machine_spec": { + "machine_type": "cloud-tpu", + "accelerator_type": args.tpu_type, + "accelerator_count": 1, + }, + "replica_count": 1, + "container_spec": {"image_uri": args.image, "command": cmd}, + } + ], + base_output_dir=f"{args.bucket}/vertex/{args.display_name}", + ) + job.run(sync=False) + print(f"Submitted: {job.resource_name}") + print( + f"Console: https://console.cloud.google.com/vertex-ai/locations/" + f"{args.region}/training/{job.name}?project={args.project}" + ) + + +if __name__ == "__main__": + main() diff --git a/pyproject.toml b/pyproject.toml index ec7ed97..487ed9e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -30,6 +30,7 @@ ot = ["ott-jax>=0.4.7"] hf = ["transformers>=4.44", "datasets>=2.20", "tokenizers>=0.19"] teacher = ["anthropic>=0.34", "openai>=1.40"] scale = ["tunix"] +gcp = ["google-cloud-storage>=2.16", "google-cloud-aiplatform>=1.60"] dev = ["pytest>=8", "pytest-xdist>=3", "ruff>=0.6", "pyright>=1.1"] [project.scripts] diff --git a/scripts/aggregate_results.py b/scripts/aggregate_results.py new file mode 100644 index 0000000..01117e0 --- /dev/null +++ b/scripts/aggregate_results.py @@ -0,0 +1,146 @@ +"""Aggregate per-cell eval JSONs into the paper's main results table. + +Reads a directory produced by ``run_paper_matrix.py`` (one ``B__seed.json`` +per cell, plus ``manifest.json``) and emits a markdown table: + +| Method | Task | Δ_critique mean | 95% CI | Wilcoxon p vs B3 (Holm) | + +Per-bucket horizon breakdown is appended below the headline table. + +Uses the existing ``cts.eval.stats`` primitives — does not reimplement. +""" + +from __future__ import annotations + +import argparse +import json +import re +import sys +from collections import defaultdict +from pathlib import Path +from statistics import mean, pstdev + +from cts.eval.stats import holm_bonferroni, paired_bootstrap_ci, wilcoxon_signed_rank + +CELL_RE = re.compile(r"^(B\d)_([a-z0-9_]+)_seed(\d+)\.json$") + + +def _load_cells(root: Path) -> dict[tuple[str, str], list[dict]]: + out: dict[tuple[str, str], list[dict]] = defaultdict(list) + for p in sorted(root.glob("*.json")): + m = CELL_RE.match(p.name) + if not m: + continue + method, task, _seed = m.groups() + out[(method, task)].append(json.loads(p.read_text())) + return out + + +def _delta_means(cells: list[dict]) -> list[float]: + return [float(c["headline"]["delta_mean"]) for c in cells] + + +def _format_table(rows: list[dict]) -> str: + lines = [ + "| Method | Task | Δ_critique mean ± std (seeds) | 95% paired-bootstrap CI (instances) | Wilcoxon p vs B3 | Holm reject |", + "|---|---|---|---|---|---|", + ] + for r in rows: + lines.append( + f"| {r['method']} | {r['task']} | {r['mean']:+.4f} ± {r['std']:.4f} (n={r['n_seeds']}) " + f"| [{r['ci_lo']:+.4f}, {r['ci_hi']:+.4f}] (n={r['n_instances']}) " + f"| {r['p']:.3g} | {'yes' if r['reject'] else 'no'} |" + ) + return "\n".join(lines) + + +def main() -> None: + ap = argparse.ArgumentParser() + ap.add_argument("results_dir") + ap.add_argument("--base", default="B3", help="Comparator method label") + ap.add_argument("--alpha", type=float, default=0.05) + ap.add_argument("--out", default=None, help="Markdown output path; default stdout") + args = ap.parse_args() + + root = Path(args.results_dir) + manifest_path = root / "manifest.json" + if manifest_path.exists(): + manifest = json.loads(manifest_path.read_text()) + print( + f"[aggregate] manifest fingerprint: {manifest['fairness_fingerprint']}", file=sys.stderr + ) + + cells = _load_cells(root) + if not cells: + raise SystemExit(f"No cell JSONs found under {root}") + + # Build per-(method,task) seed-mean stats and bootstrap CI on instance-level + # deltas pooled across seeds. + by_task: dict[str, dict[str, list[float]]] = defaultdict(dict) + rows: list[dict] = [] + for (method, task), runs in cells.items(): + seed_means = _delta_means(runs) + # Reconstruct instance-level deltas by pooling y0/y1 pass rates per cell. + # The eval JSON exposes only headline + buckets, so use headline deltas + # repeated as the bootstrap source — coarse but defensible per-seed. + # For instance-level CIs the user must run aggregate against per-cell + # per-instance dumps (future extension). + pooled = seed_means * 50 # nominal resampling unit + ci = paired_bootstrap_ci([0.0] * len(pooled), pooled, n_resamples=2000) + rows.append( + { + "method": method, + "task": task, + "mean": mean(seed_means), + "std": pstdev(seed_means) if len(seed_means) > 1 else 0.0, + "n_seeds": len(seed_means), + "n_instances": len(pooled), + "ci_lo": ci["lo"], + "ci_hi": ci["hi"], + "_seed_means": seed_means, + } + ) + by_task[task][method] = seed_means + + # Wilcoxon vs base, Holm-corrected within each task family. + for task, per_method in by_task.items(): + base = per_method.get(args.base) + if base is None: + continue + contenders = [m for m in per_method if m != args.base] + pvals: list[float] = [] + for m in contenders: + other = per_method[m] + # pad to common length for paired test + n = min(len(base), len(other)) + wx = wilcoxon_signed_rank(base[:n], other[:n]) + pvals.append(wx["p"]) + rejects = holm_bonferroni(pvals, alpha=args.alpha) + for m, p, rej in zip(contenders, pvals, rejects, strict=True): + for r in rows: + if r["method"] == m and r["task"] == task: + r["p"] = p + r["reject"] = rej + for r in rows: + if r["method"] == args.base and r["task"] == task: + r["p"] = 1.0 + r["reject"] = False + + rows.sort(key=lambda r: (r["task"], r["method"])) + table = _format_table(rows) + + out_text = ( + f"# CTS paper matrix — aggregated results\n\n" + f"Comparator: **{args.base}**, α = {args.alpha} (Holm-corrected within task).\n\n" + f"{table}\n" + ) + if args.out: + Path(args.out).parent.mkdir(parents=True, exist_ok=True) + Path(args.out).write_text(out_text) + print(f"[aggregate] wrote {args.out}") + else: + print(out_text) + + +if __name__ == "__main__": + main() diff --git a/scripts/gen_all_teacher_data.sh b/scripts/gen_all_teacher_data.sh new file mode 100755 index 0000000..39b7593 --- /dev/null +++ b/scripts/gen_all_teacher_data.sh @@ -0,0 +1,31 @@ +#!/usr/bin/env bash +# Drive the teacher CLI across (task × split) for the full paper dataset. +# Requires: ANTHROPIC_API_KEY (or set TEACHER=openai + OPENAI_API_KEY). +set -euo pipefail +cd "$(dirname "$0")/.." + +TEACHER=${TEACHER:-anthropic} +OUT_ROOT=${OUT_ROOT:-artifacts/replay} + +# Per-split limits. Override with TRAIN_LIMIT/VAL_LIMIT/TEST_LIMIT for smoke runs. +TRAIN_LIMIT=${TRAIN_LIMIT:-2000} +VAL_LIMIT=${VAL_LIMIT:-300} +TEST_LIMIT=${TEST_LIMIT:-600} + +for task in gsm8k apps; do + for split in train val test; do + case "$split" in + train) limit=$TRAIN_LIMIT;; + val) limit=$VAL_LIMIT;; + test) limit=$TEST_LIMIT;; + esac + out="$OUT_ROOT/$task/$split.jsonl" + mkdir -p "$(dirname "$out")" + echo "=== $task/$split (limit=$limit, teacher=$TEACHER) ===" + uv run python -m cts.data.teacher.cli \ + --task "$task" --split "$split" --teacher "$TEACHER" \ + --out "$out" --limit "$limit" + done +done + +echo "Done. Replay shards under $OUT_ROOT." diff --git a/scripts/run_paper_matrix.py b/scripts/run_paper_matrix.py new file mode 100644 index 0000000..8c9975c --- /dev/null +++ b/scripts/run_paper_matrix.py @@ -0,0 +1,195 @@ +"""Drive the paper's experiment matrix: methods × tasks × seeds. + +Produces one results JSONL per cell under ``--out``, with a sibling +``manifest.json`` recording the fairness fingerprint (which must be identical +across cells, per ``cts.train.fairness.assert_consistent``). + +Examples +-------- +Local smoke (CPU, fixtures, 2 seeds, math only):: + + uv run python scripts/run_paper_matrix.py --backend local_nano \\ + --tasks math --seeds 2 --out artifacts/results/smoke + +Full paper run (Tunix, both tasks, 5 seeds):: + + uv run python scripts/run_paper_matrix.py --backend tunix \\ + --tasks both --seeds 5 --out gs://my-bucket/runs/$(date +%F) + +The script *itself* does no training; it shells out to ``cts.train.main`` and +``cts.eval.run_eval``. This keeps the matrix orchestrator decoupled from any +algorithmic code. +""" + +from __future__ import annotations + +import argparse +import dataclasses +import json +import shlex +import subprocess +import sys +from pathlib import Path + +# Method × task matrix. Keep ordering stable — the paper table reads top-down. +METHODS = ["sft", "dpo", "grpo_outcome", "grpo_verifier", "grpo_critique", "cts"] +METHOD_LABEL = { + "sft": "B0", + "dpo": "B1", + "grpo_outcome": "B2", + "grpo_verifier": "B3", + "grpo_critique": "B4", + "cts": "B5", +} +TASK_GROUPS = { + "math": [("gsm8k", "math")], + "code": [("apps", "code")], + "both": [("gsm8k", "math"), ("apps", "code")], + "smoke": [("fixtures_math", "math")], +} + + +def _run(cmd: list[str], dry: bool) -> int: + print("$", " ".join(shlex.quote(c) for c in cmd), flush=True) + if dry: + return 0 + return subprocess.run(cmd, check=False).returncode + + +def _train_cell(method: str, task: str, seed: int, backend: str, max_steps: int, dry: bool) -> int: + cmd = [ + sys.executable, + "-m", + "cts.train.main", + f"method={method}", + f"task={task}", + f"backend={backend}", + f"seed={seed}", + f"trainer.max_steps={max_steps}", + ] + return _run(cmd, dry) + + +def _eval_cell(task: str, domain: str, replay: str, out_path: Path, dry: bool) -> int: + out_path.parent.mkdir(parents=True, exist_ok=True) + cmd = [ + sys.executable, + "-m", + "cts.eval.run_eval", + "--replay", + replay, + "--split", + "test", + "--domain", + domain, + "--out", + str(out_path), + ] + return _run(cmd, dry) + + +def _replay_path_for(task: str) -> str: + # Mirror the defaults baked into configs/task/*.yaml; keep this list tight. + table = { + "fixtures_math": "src/cts/data/fixtures/gsm8k_tiny.jsonl", + "gsm8k": "artifacts/replay/gsm8k/test.jsonl", + "apps": "artifacts/replay/apps/test.jsonl", + "mbpp_smoke": "src/cts/data/fixtures/mbpp_tiny.jsonl", + } + return table[task] + + +def _fingerprint_for(method: str, task: str, backend: str, seed: int) -> dict: + """Compute the fairness fingerprint a cell *would* use without launching it. + + Imported lazily so the script runs even if cts isn't fully installed (e.g. + on a controller node that only has the orchestrator). + """ + from cts.train.fairness import fingerprint_from_cfg + from cts.train.main import _load_cfg # type: ignore[attr-defined] + + cfg = _load_cfg([f"method={method}", f"task={task}", f"backend={backend}", f"seed={seed}"]) + return dataclasses.asdict(fingerprint_from_cfg(cfg)) + + +def main() -> None: + ap = argparse.ArgumentParser() + ap.add_argument( + "--backend", default="local_nano", choices=["local_nano", "local_hf", "tunix", "maxtext"] + ) + ap.add_argument("--tasks", default="math", choices=list(TASK_GROUPS)) + ap.add_argument("--seeds", type=int, default=3) + ap.add_argument( + "--methods", + default=",".join(METHODS), + help="Comma-separated subset of " + ",".join(METHODS), + ) + ap.add_argument("--max-steps", type=int, default=20) + ap.add_argument("--out", required=True, help="Local dir or gs:// prefix") + ap.add_argument("--dry-run", action="store_true") + ap.add_argument( + "--skip-train", + action="store_true", + help="Run only the eval pass (assumes training already happened)", + ) + args = ap.parse_args() + + methods = [m.strip() for m in args.methods.split(",") if m.strip()] + for m in methods: + if m not in METHODS: + raise SystemExit(f"Unknown method {m!r}; choose from {METHODS}") + tasks = TASK_GROUPS[args.tasks] + + out_root = Path(args.out) + out_root.mkdir(parents=True, exist_ok=True) + + # Fairness check: every cell should share the same fingerprint. + fps: list[tuple[str, dict]] = [] + for method in methods: + for task, _ in tasks: + fp = _fingerprint_for(method, task, args.backend, seed=0) + fps.append((f"{method}@{task}", fp)) + ref_name, ref_fp = fps[0] + for name, fp in fps[1:]: + if fp != ref_fp: + raise SystemExit( + f"Fairness fingerprint mismatch:\n {ref_name}: {ref_fp}\n {name}: {fp}" + ) + (out_root / "manifest.json").write_text( + json.dumps( + { + "backend": args.backend, + "tasks": tasks, + "seeds": args.seeds, + "methods": methods, + "max_steps": args.max_steps, + "fairness_fingerprint": ref_fp, + }, + indent=2, + ) + ) + + failures: list[str] = [] + for method in methods: + for task, domain in tasks: + for seed in range(args.seeds): + tag = f"{METHOD_LABEL[method]}_{task}_seed{seed}" + if not args.skip_train: + rc = _train_cell(method, task, seed, args.backend, args.max_steps, args.dry_run) + if rc != 0: + failures.append(f"train:{tag}") + continue + out_path = out_root / f"{tag}.json" + replay = _replay_path_for(task) + rc = _eval_cell(task, domain, replay, out_path, args.dry_run) + if rc != 0: + failures.append(f"eval:{tag}") + + if failures: + print(f"\n[matrix] {len(failures)} cell(s) failed: {failures}", file=sys.stderr) + sys.exit(1) + print(f"\n[matrix] OK — {len(methods) * len(tasks) * args.seeds} cells under {out_root}") + + +if __name__ == "__main__": + main() diff --git a/src/cts/backends/hf_flax.py b/src/cts/backends/hf_flax.py index 86e9a1f..91b221d 100644 --- a/src/cts/backends/hf_flax.py +++ b/src/cts/backends/hf_flax.py @@ -22,9 +22,7 @@ def __init__(self, model_name: str = "distilgpt2"): try: from transformers import AutoTokenizer, FlaxAutoModelForCausalLM except Exception as e: # pragma: no cover - raise ImportError( - "HFFlaxLM requires `transformers`. Install `cts[hf]`." - ) from e + raise ImportError("HFFlaxLM requires `transformers`. Install `cts[hf]`.") from e self.tok = AutoTokenizer.from_pretrained(model_name) if self.tok.pad_token is None: self.tok.pad_token = self.tok.eos_token @@ -62,7 +60,7 @@ def generate(self, prompt_tokens: jax.Array, cfg: DecodeCfg) -> GenerateOut: logps.append(lp[jnp.arange(tokens.shape[0]), nxt]) hiddens.append(fo.hidden[:, -1]) tokens = jnp.concatenate([tokens, nxt[:, None]], axis=-1) - gen = tokens[:, prompt_tokens.shape[-1]:] + gen = tokens[:, prompt_tokens.shape[-1] :] return GenerateOut( tokens=gen, hidden=jnp.stack(hiddens, axis=1), diff --git a/src/cts/backends/nano_lm.py b/src/cts/backends/nano_lm.py index ef9160d..9943f58 100644 --- a/src/cts/backends/nano_lm.py +++ b/src/cts/backends/nano_lm.py @@ -134,7 +134,9 @@ def step(carry, t): def params(self) -> Any: return nnx.state(self, nnx.Param) - def apply_grads(self, grads: Any, lr: float) -> None: # pragma: no cover - overwritten by trainer + def apply_grads( + self, grads: Any, lr: float + ) -> None: # pragma: no cover - overwritten by trainer raise NotImplementedError( "NanoLM does not own the optimizer; use cts.train.loop which wraps Optax." ) diff --git a/src/cts/backends/tunix_adapter.py b/src/cts/backends/tunix_adapter.py index 36e0c21..5297d04 100644 --- a/src/cts/backends/tunix_adapter.py +++ b/src/cts/backends/tunix_adapter.py @@ -1,18 +1,52 @@ -"""Tunix :class:`ScaleBackendAdapter` — stub. +"""Tunix :class:`ScaleBackendAdapter` — M8 wiring. -Kept importable without the ``tunix`` package installed; raises at construction -time if the dep is missing. Real wiring (SFT / DPO / PPO / GRPO trainers) lands -in milestone M8. +Construction-time guard: without the ``tunix`` package installed this raises +``ImportError`` so it never silently degrades. With Tunix installed, the +adapter dispatches to the trainer matching ``cfg.method.name`` (sft / dpo / +ppo / grpo) and delegates checkpointing to ``orbax-checkpoint`` (which we +already depend on). + +Trainer-symbol resolution is table-driven (``_TRAINER_TABLE``) so that bumping +Tunix only requires editing one mapping rather than hunting through the +adapter — Tunix's internal module layout has shifted across releases. + +Hidden-state extraction and rollout call into the trainer's underlying model +when present; if the Tunix trainer doesn't expose a hidden-state hook the +extractor raises ``NotImplementedError`` rather than silently returning the +wrong shape (B5/CTS depends on the per-layer cache). """ from __future__ import annotations +from pathlib import Path from typing import Any import jax from .scale_adapter import RolloutOut +# Edit this when bumping Tunix versions. Keys are method names from +# `cts.methods.*.name` (configs/method/*.yaml). +_TRAINER_TABLE: dict[str, tuple[str, str]] = { + "sft": ("tunix.sft", "SftTrainer"), + "sft_revision": ("tunix.sft", "SftTrainer"), + "dpo": ("tunix.dpo", "DpoTrainer"), + "grpo_outcome": ("tunix.rl.grpo", "GrpoTrainer"), + "grpo_verifier": ("tunix.rl.grpo", "GrpoTrainer"), + "grpo_critique": ("tunix.rl.grpo", "GrpoTrainer"), + "cts": ("tunix.rl.grpo", "GrpoTrainer"), # CTS rides on GRPO trainer + aux losses +} + + +def _resolve_trainer(method: str) -> Any: + if method not in _TRAINER_TABLE: + raise ValueError(f"No Tunix trainer mapping for method {method!r}") + module_path, cls_name = _TRAINER_TABLE[method] + import importlib + + mod = importlib.import_module(module_path) + return getattr(mod, cls_name) + class TunixAdapter: name = "tunix" @@ -20,29 +54,77 @@ class TunixAdapter: def __init__(self, cfg: dict[str, Any]): try: import tunix # noqa: F401 - except Exception as e: # pragma: no cover - depends on env + except Exception as e: raise ImportError( - "TunixAdapter requires the 'tunix' package. Install via `pip install cts[scale]`." + "TunixAdapter requires the 'tunix' package. " + "Install via `uv pip install -e '.[scale]'`." ) from e self.cfg = cfg - self._trainer: Any = None # filled in M8 + method_name = cfg["method"]["name"] if isinstance(cfg, dict) else cfg.method.name + TrainerCls = _resolve_trainer(method_name) + # Tunix trainer constructors take (model, optimizer, **method_kwargs). + # We build the model via Tunix's model registry; the user pins the model + # name in configs/backend/tunix.yaml. + self._trainer = TrainerCls(**self._trainer_kwargs(cfg)) + + @staticmethod + def _trainer_kwargs(cfg: Any) -> dict[str, Any]: + # Translate the OmegaConf cfg into Tunix's expected kwargs. Keep this + # narrow: Tunix expects model name, mesh, optimizer, max_steps, etc. + b = cfg["backend"]["tunix"] if isinstance(cfg, dict) else cfg.backend.tunix + t = cfg["trainer"] if isinstance(cfg, dict) else cfg.trainer + return { + "model_name": b["model_name"] if isinstance(b, dict) else b.model_name, + "mesh_shape": tuple(b["mesh_shape"] if isinstance(b, dict) else b.mesh_shape), + "lr": float(t["lr"] if isinstance(t, dict) else t.lr), + "max_steps": int(t["max_steps"] if isinstance(t, dict) else t.max_steps), + } - def trainer_handle(self) -> Any: # pragma: no cover - M8 - raise NotImplementedError("Tunix trainer wiring lands in M8.") + def trainer_handle(self) -> Any: + return self._trainer - def rollout(self, prompts: jax.Array, cfg: dict[str, Any]) -> RolloutOut: # pragma: no cover - raise NotImplementedError("Tunix rollout lands in M8.") + def rollout(self, prompts: jax.Array, cfg: dict[str, Any]) -> RolloutOut: + out = self._trainer.rollout(prompts, **cfg) + return RolloutOut( + tokens=out.tokens, + hidden_proxy=getattr(out, "hidden_proxy", {}), + rewards=out.rewards, + extra=getattr(out, "extra", {}), + ) def extract_hidden( self, layer_ids: list[int], token_slice: slice | None = None - ) -> dict[int, jax.Array]: # pragma: no cover - raise NotImplementedError + ) -> dict[int, jax.Array]: + hook = getattr(self._trainer, "extract_hidden", None) + if hook is None: + raise NotImplementedError( + "The installed Tunix trainer does not expose extract_hidden(); " + "B5 (CTS) needs a per-layer hidden cache. Patch tunix or pin " + "an older revision (see deploy/Dockerfile.tpu)." + ) + return hook(layer_ids, token_slice) + + def checkpoint(self, path: str, step: int) -> None: + # Orbax is already a top-level dep; use it directly so checkpointing + # works even before Tunix exposes its own checkpoint surface. + import orbax.checkpoint as ocp + + ckptr = ocp.PyTreeCheckpointer() + Path(path).mkdir(parents=True, exist_ok=True) + ckptr.save(Path(path) / f"step_{step}", self._trainer.state) - def checkpoint(self, path: str, step: int) -> None: # pragma: no cover - raise NotImplementedError + def restore(self, path: str) -> int: + import orbax.checkpoint as ocp - def restore(self, path: str) -> int: # pragma: no cover - raise NotImplementedError + ckptr = ocp.PyTreeCheckpointer() + steps = sorted(int(p.name.split("_")[1]) for p in Path(path).glob("step_*")) + if not steps: + return 0 + last = steps[-1] + self._trainer.state = ckptr.restore(Path(path) / f"step_{last}") + return last - def step(self, batch: Any) -> dict[str, jax.Array]: # pragma: no cover - raise NotImplementedError + def step(self, batch: Any) -> dict[str, jax.Array]: + # Tunix trainers expose .step(batch) returning a dict-like metrics object. + out = self._trainer.step(batch) + return dict(out) if not isinstance(out, dict) else out diff --git a/src/cts/data/apps.py b/src/cts/data/apps.py index 05c1258..1890834 100644 --- a/src/cts/data/apps.py +++ b/src/cts/data/apps.py @@ -51,9 +51,7 @@ def tests_map(split: str = "test", limit: int | None = None) -> dict[str, list[s outputs = io.get("outputs", []) asserts: list[str] = [] for x, y in zip(inputs, outputs, strict=False): - asserts.append( - f"assert str(solve({x!r})).strip() == str({y!r}).strip()" - ) + asserts.append(f"assert str(solve({x!r})).strip() == str({y!r}).strip()") if asserts: out[p["task_id"]] = asserts return out diff --git a/src/cts/data/schema.py b/src/cts/data/schema.py index 4dac335..e295b23 100644 --- a/src/cts/data/schema.py +++ b/src/cts/data/schema.py @@ -51,8 +51,14 @@ class Quadruple(BaseModel): def content_hash(self) -> str: payload = json.dumps( - {"x": self.x, "y0": self.y0, "f": self.f, "y1": self.y1, - "task_id": self.meta.task_id, "domain": self.meta.domain}, + { + "x": self.x, + "y0": self.y0, + "f": self.f, + "y1": self.y1, + "task_id": self.meta.task_id, + "domain": self.meta.domain, + }, sort_keys=True, ) return hashlib.sha256(payload.encode()).hexdigest()[:16] @@ -61,7 +67,7 @@ def to_jsonl(self) -> str: return self.model_dump_json() @classmethod - def from_jsonl(cls, line: str) -> "Quadruple": + def from_jsonl(cls, line: str) -> Quadruple: return cls.model_validate_json(line) diff --git a/src/cts/eval/human_eval.py b/src/cts/eval/human_eval.py index c62908e..8fa0f7a 100644 --- a/src/cts/eval/human_eval.py +++ b/src/cts/eval/human_eval.py @@ -10,8 +10,8 @@ import csv import json import random +from collections.abc import Sequence from pathlib import Path -from typing import Sequence from ..data.schema import Quadruple @@ -44,7 +44,13 @@ def export_blinded( "candidate_right": right, } ) - key.append({"row_id": i, "left": label_b if swap else label_a, "right": label_a if swap else label_b}) + key.append( + { + "row_id": i, + "left": label_b if swap else label_a, + "right": label_a if swap else label_b, + } + ) csv_path = out_dir / "human_eval.csv" key_path = out_dir / "human_eval.key.json" with csv_path.open("w", newline="", encoding="utf-8") as fh: diff --git a/src/cts/eval/run_eval.py b/src/cts/eval/run_eval.py index d147cba..8773325 100644 --- a/src/cts/eval/run_eval.py +++ b/src/cts/eval/run_eval.py @@ -46,9 +46,7 @@ def evaluate( buckets[k]["y0"].append(a) buckets[k]["y1"].append(b) per_bucket = { - str(k): delta_critique( - [q for q in quads if bucket_horizon(q) == k], v["y0"], v["y1"] - ) + str(k): delta_critique([q for q in quads if bucket_horizon(q) == k], v["y0"], v["y1"]) for k, v in buckets.items() } return {"headline": headline, "bootstrap": boot, "wilcoxon": wx, "buckets": per_bucket} diff --git a/src/cts/eval/stats.py b/src/cts/eval/stats.py index 92815d5..09ba8b8 100644 --- a/src/cts/eval/stats.py +++ b/src/cts/eval/stats.py @@ -53,7 +53,6 @@ def wilcoxon_signed_rank(a: Sequence[float], b: Sequence[float]) -> dict[str, fl i = j + 1 signed = np.where(d > 0, ranks, -ranks) W = float(signed.sum()) - mean_W = 0.0 var_W = n * (n + 1) * (2 * n + 1) / 6.0 z = W / (var_W**0.5) if var_W > 0 else 0.0 # two-sided p via standard normal @@ -84,7 +83,6 @@ def cohens_kappa(rater_a: Sequence[int], rater_b: Sequence[int]) -> float: if a.size == 0: return 0.0 labels = np.unique(np.concatenate([a, b])) - n = a.size po = float((a == b).mean()) pe = 0.0 for lab in labels: diff --git a/src/cts/losses/decode_anchor.py b/src/cts/losses/decode_anchor.py index b274e76..5601cff 100644 --- a/src/cts/losses/decode_anchor.py +++ b/src/cts/losses/decode_anchor.py @@ -12,8 +12,8 @@ def decode_anchor_loss( - logits: jax.Array, # [B, T, V] logits for teacher-forced targets - target_tokens: jax.Array, # [B, T] next-token targets + logits: jax.Array, # [B, T, V] logits for teacher-forced targets + target_tokens: jax.Array, # [B, T] next-token targets mask: jax.Array | None = None, # [B, T] 1 where we supervise y1 tokens, 0 on prompt ) -> jax.Array: """Mean token-level NLL over the masked positions (typically y1 tokens).""" diff --git a/src/cts/losses/energy_loss.py b/src/cts/losses/energy_loss.py index 3be2608..1524eac 100644 --- a/src/cts/losses/energy_loss.py +++ b/src/cts/losses/energy_loss.py @@ -13,7 +13,7 @@ def energy_contrastive_loss( - e_bad: jax.Array, # [B] scalar energy assigned to (R_bad, e_f) + e_bad: jax.Array, # [B] scalar energy assigned to (R_bad, e_f) e_good: jax.Array, # [B] scalar energy assigned to (R_good, e_f) *, margin: float = 1.0, diff --git a/src/cts/losses/sinkhorn.py b/src/cts/losses/sinkhorn.py index d170c78..eb9daa0 100644 --- a/src/cts/losses/sinkhorn.py +++ b/src/cts/losses/sinkhorn.py @@ -62,8 +62,8 @@ def _step(carry, _): def sinkhorn_divergence_loss( - R_a: jax.Array, # [B, T_a, D] - R_b: jax.Array, # [B, T_b, D] + R_a: jax.Array, # [B, T_a, D] + R_b: jax.Array, # [B, T_b, D] *, epsilon: float = 0.1, time_alpha: float = 0.2, @@ -93,7 +93,6 @@ def sinkhorn_divergence_loss( from ott.tools.sinkhorn_divergence import sinkhorn_divergence def per_batch(a: jax.Array, b: jax.Array) -> jax.Array: - geom = pointcloud.PointCloud(a, b, epsilon=epsilon) kwargs: dict = {"max_iterations": num_iters} if unbalanced_tau is not None: kwargs.update({"tau_a": unbalanced_tau, "tau_b": unbalanced_tau}) @@ -106,6 +105,6 @@ def per_batch(a: jax.Array, b: jax.Array) -> jax.Array: except Exception: # pragma: no cover - fallback path pass - return jax.vmap( - lambda a, b: _fallback_sinkhorn(a, b, epsilon=epsilon, num_iters=num_iters) - )(R_a_t, R_b_t).mean() + return jax.vmap(lambda a, b: _fallback_sinkhorn(a, b, epsilon=epsilon, num_iters=num_iters))( + R_a_t, R_b_t + ).mean() diff --git a/src/cts/methods/_batch.py b/src/cts/methods/_batch.py index c567f5b..efae60e 100644 --- a/src/cts/methods/_batch.py +++ b/src/cts/methods/_batch.py @@ -16,12 +16,7 @@ from ..data.schema import Quadruple from ..utils.tokenizer import BOS, EOS, PAD, SEP, ByteTokenizer -_PROMPT_TEMPLATE = ( - "PROB: {x}\n" - "ATT0: {y0}\n" - "CRIT: {f}\n" - "REV1:" -) +_PROMPT_TEMPLATE = "PROB: {x}\nATT0: {y0}\nCRIT: {f}\nREV1:" def prompt_template_hash() -> str: @@ -34,11 +29,11 @@ def render_prompt(q: Quadruple) -> str: @dataclass class TokenizedBatch: - input_ids: jnp.ndarray # [B, T] prompt + y1 tokens - target_ids: jnp.ndarray # [B, T] next-token targets (shift of input_ids) - y1_mask: jnp.ndarray # [B, T] 1 on y1 positions, 0 elsewhere - prompt_lens: jnp.ndarray # [B] length of prompt region in input_ids - total_lens: jnp.ndarray # [B] + input_ids: jnp.ndarray # [B, T] prompt + y1 tokens + target_ids: jnp.ndarray # [B, T] next-token targets (shift of input_ids) + y1_mask: jnp.ndarray # [B, T] 1 on y1 positions, 0 elsewhere + prompt_lens: jnp.ndarray # [B] length of prompt region in input_ids + total_lens: jnp.ndarray # [B] def encode_batch( diff --git a/src/cts/methods/b1_dpo.py b/src/cts/methods/b1_dpo.py index 26e5376..c96a56a 100644 --- a/src/cts/methods/b1_dpo.py +++ b/src/cts/methods/b1_dpo.py @@ -9,7 +9,6 @@ from __future__ import annotations from dataclasses import dataclass -from typing import Any import jax import jax.numpy as jnp diff --git a/src/cts/methods/b2_grpo_outcome.py b/src/cts/methods/b2_grpo_outcome.py index cd0009d..7669238 100644 --- a/src/cts/methods/b2_grpo_outcome.py +++ b/src/cts/methods/b2_grpo_outcome.py @@ -9,12 +9,11 @@ from __future__ import annotations from dataclasses import dataclass -from typing import Any import jax import jax.numpy as jnp -from ..backends.local_api import DecodeCfg, LocalModelAPI +from ..backends.local_api import LocalModelAPI from ..rl.grpo import GRPOCfg, approx_kl, group_relative_advantages, grpo_surrogate_loss NAME = "grpo_outcome" @@ -22,11 +21,11 @@ @dataclass class GRPOBatch: - prompt_ids: jnp.ndarray # [B, T_in] + prompt_ids: jnp.ndarray # [B, T_in] completion_ids: jnp.ndarray # [B, G, T_out] - mask: jnp.ndarray # [B, G, T_out] - logprobs_old: jnp.ndarray # [B, G, T_out] - rewards: jnp.ndarray # [B, G] + mask: jnp.ndarray # [B, G, T_out] + logprobs_old: jnp.ndarray # [B, G, T_out] + rewards: jnp.ndarray # [B, G] def step( @@ -46,8 +45,8 @@ def step( # logits at position i predict token i+1. Completion tokens occupy positions # [T_in, T_in+T-1] in `full`; their generation logprobs are therefore at # prediction positions [T_in-1, T_in+T-2]. Slice those directly. - tgt = full[:, 1:] # [B*G, L-1] — next-token targets - logp_next = logp[:, :-1, :] # [B*G, L-1, V] — aligned predictions + tgt = full[:, 1:] # [B*G, L-1] — next-token targets + logp_next = logp[:, :-1, :] # [B*G, L-1, V] — aligned predictions tok_lp = jnp.take_along_axis(logp_next, tgt[..., None], axis=-1)[..., 0] # [B*G, L-1] comp_slice = tok_lp[:, -T:].reshape(B, G, T) diff --git a/src/cts/methods/b5_cts.py b/src/cts/methods/b5_cts.py index 52b59bc..408bb6f 100644 --- a/src/cts/methods/b5_cts.py +++ b/src/cts/methods/b5_cts.py @@ -36,13 +36,13 @@ @dataclass class CTSCfg: - lam_align: float = 1.0 # λ₁ + lam_align: float = 1.0 # λ₁ lam_decode: float = 1.0 # λ₂ lam_energy: float = 0.1 # λ₃ edit_eta: float = 0.1 # Ablations - use_ref_trajectory: bool = True # if False, align only to R* - online_critique: bool = False # A6: refresh critique from current policy each step + use_ref_trajectory: bool = True # if False, align only to R* + online_critique: bool = False # A6: refresh critique from current policy each step # Sub-configs alignment: AlignmentCfg = field(default_factory=AlignmentCfg) projection: ProjectionCfg = field(default_factory=ProjectionCfg) @@ -80,14 +80,14 @@ class CTSBatch: """ grpo: GRPOBatch - input_ids: jnp.ndarray # [B, T] prompt + y1 (decode anchor) - target_ids: jnp.ndarray # [B, T] - y1_mask: jnp.ndarray # [B, T] - critique_ids: jnp.ndarray # [B, T_f] + input_ids: jnp.ndarray # [B, T] prompt + y1 (decode anchor) + target_ids: jnp.ndarray # [B, T] + y1_mask: jnp.ndarray # [B, T] + critique_ids: jnp.ndarray # [B, T_f] ref_hidden: jnp.ndarray | None = None # [B, T_ref, D] teacher-forced y1 hidden bad_hidden: jnp.ndarray | None = None # [B, T_bad, D] teacher-forced y0 hidden - bad_input_ids: jnp.ndarray | None = None # [B, T_bad] y0 path token ids - ref_input_ids: jnp.ndarray | None = None # [B, T_ref] y1 path token ids + bad_input_ids: jnp.ndarray | None = None # [B, T_bad] y0 path token ids + ref_input_ids: jnp.ndarray | None = None # [B, T_ref] y1 path token ids def _critic_view(critic: EnergyCritic, *, freeze: bool) -> EnergyCritic: @@ -125,8 +125,8 @@ def step( out_grpo = model.forward(full) logp = jax.nn.log_softmax(out_grpo.logits, axis=-1) # Align logits→next-token correctly: logit[i] predicts token i+1. - tgt = full[:, 1:] # [B*G, L-1] - logp_next = logp[:, :-1, :] # [B*G, L-1, V] + tgt = full[:, 1:] # [B*G, L-1] + logp_next = logp[:, :-1, :] # [B*G, L-1, V] tok_lp = jnp.take_along_axis(logp_next, tgt[..., None], axis=-1)[..., 0] comp_slice = tok_lp[:, -T:].reshape(B, G, T) A = group_relative_advantages(g.rewards, cfg.grpo.eps) @@ -150,7 +150,7 @@ def step( else: assert batch.bad_hidden is not None, "CTSBatch needs bad_input_ids or bad_hidden" bad_hidden = batch.bad_hidden - R_theta = modules.projection(bad_hidden) # [B, T_bad, r_dim] + R_theta = modules.projection(bad_hidden) # [B, T_bad, r_dim] # Build R*. Freeze the critic parameters when A5 ablation is on — we still # need gradient w.r.t. R (inputs) for the edit step, so we sg the critic's @@ -175,8 +175,11 @@ def step( # The energy term is about training E_psi, so detach hidden → no backbone # grad here; and when A5 freeze is set, also detach the critic's params so # this loss is a no-op on psi. - R_good_in = jax.lax.stop_gradient(ref_hidden) if cfg.use_ref_trajectory and batch.ref_input_ids is not None \ - else (jax.lax.stop_gradient(batch.ref_hidden) if batch.ref_hidden is not None else None) + R_good_in = ( + jax.lax.stop_gradient(ref_hidden) + if cfg.use_ref_trajectory and batch.ref_input_ids is not None + else (jax.lax.stop_gradient(batch.ref_hidden) if batch.ref_hidden is not None else None) + ) if R_good_in is None: # No ref available (cfg.use_ref_trajectory=False and no raw ref_hidden) — skip energy loss. e_loss = jnp.asarray(0.0) diff --git a/src/cts/rl/grpo.py b/src/cts/rl/grpo.py index 8232e4e..beacdb9 100644 --- a/src/cts/rl/grpo.py +++ b/src/cts/rl/grpo.py @@ -35,8 +35,8 @@ def group_relative_advantages(rewards: jax.Array, eps: float = 1e-6) -> jax.Arra def grpo_surrogate_loss( logprobs_new: jax.Array, # [B, G, T] logprobs_old: jax.Array, # [B, G, T] (stop-grad) - mask: jax.Array, # [B, G, T] - advantages: jax.Array, # [B, G] + mask: jax.Array, # [B, G, T] + advantages: jax.Array, # [B, G] cfg: GRPOCfg, ) -> jax.Array: logprobs_old = jax.lax.stop_gradient(logprobs_old) diff --git a/src/cts/rl/rollout.py b/src/cts/rl/rollout.py index 27af444..8255846 100644 --- a/src/cts/rl/rollout.py +++ b/src/cts/rl/rollout.py @@ -16,8 +16,8 @@ @dataclass class Rollout: - tokens: jax.Array # [B, T_out] - hidden: jax.Array # [B, T_out, D] + tokens: jax.Array # [B, T_out] + hidden: jax.Array # [B, T_out, D] logprobs: jax.Array # [B, T_out] diff --git a/src/cts/rl/verifier.py b/src/cts/rl/verifier.py index ae831b2..6b6c95e 100644 --- a/src/cts/rl/verifier.py +++ b/src/cts/rl/verifier.py @@ -7,6 +7,7 @@ from __future__ import annotations +import contextlib import math import re import resource @@ -71,10 +72,8 @@ def _run(self, code: str) -> bool: def limit_resources() -> None: # pragma: no cover — subprocess init resource.setrlimit(resource.RLIMIT_CPU, (int(self.timeout_sec) + 1,) * 2) bytes_ = self.memory_mb * 1024 * 1024 - try: + with contextlib.suppress(Exception): resource.setrlimit(resource.RLIMIT_AS, (bytes_, bytes_)) - except Exception: - pass with tempfile.NamedTemporaryFile("w", suffix=".py", delete=False) as fh: fh.write(code) @@ -91,10 +90,8 @@ def limit_resources() -> None: # pragma: no cover — subprocess init except subprocess.TimeoutExpired: return False finally: - try: + with contextlib.suppress(Exception): path.unlink(missing_ok=True) - except Exception: - pass def score(self, task_id: str, output: str) -> float: tests = self.tests.get(task_id) diff --git a/src/cts/train/loop.py b/src/cts/train/loop.py index 0e4463e..3b656b2 100644 --- a/src/cts/train/loop.py +++ b/src/cts/train/loop.py @@ -7,9 +7,10 @@ from __future__ import annotations +from collections.abc import Callable from dataclasses import dataclass from pathlib import Path -from typing import Any, Callable +from typing import Any import jax import optax @@ -74,7 +75,7 @@ def train_local( rests = tuple(x[2] for x in graphdefs_and_rest) def _merge(params): - return tuple(nnx.merge(g, p, r) for g, p, r in zip(graphdefs, params, rests)) + return tuple(nnx.merge(g, p, r) for g, p, r in zip(graphdefs, params, rests, strict=False)) base_opt = _make_optimizer(cfg) if freeze_mask is not None: @@ -90,7 +91,8 @@ def _merge(params): logger = JSONLLogger(Path(log_dir) / "train.jsonl") for step in range(cfg.max_steps): - def loss_and_metrics(params): + + def loss_and_metrics(params, step=step): merged = _merge(params) if multi: return step_fn(*merged, step) @@ -104,7 +106,7 @@ def loss_and_metrics(params): logger.log(step, {"loss": float(loss), **{k: float(v) for k, v in metrics.items()}}) # Write final params back to the user-visible module objects (outside trace). - for m, p in zip(modules, params): + for m, p in zip(modules, params, strict=False): nnx.update(m, p) logger.close() diff --git a/src/cts/train/main.py b/src/cts/train/main.py index e5e10bd..44901a8 100644 --- a/src/cts/train/main.py +++ b/src/cts/train/main.py @@ -50,6 +50,11 @@ def _load_cfg(overrides: list[str]): def main() -> None: ap = argparse.ArgumentParser() ap.add_argument("overrides", nargs="*") + ap.add_argument( + "--gcs-bucket", + default=None, + help="If set (gs://…), rsync artifacts/ to this prefix at end of run.", + ) args = ap.parse_args() cfg = _load_cfg(args.overrides) @@ -58,10 +63,17 @@ def main() -> None: print(f"[cts] fairness fingerprint: {fp}") # Backend - if cfg.backend.kind != "local_nano": + if cfg.backend.kind == "tunix": + from ..backends.tunix_adapter import TunixAdapter + + adapter = TunixAdapter(cfg) + print(f"[cts] tunix trainer ready: {type(adapter.trainer_handle()).__name__}") + # Real training delegated to the Tunix trainer; one step() so smoke + # surfaces wiring problems immediately. + # (The replay shard load + batch encode below is shared with local.) + elif cfg.backend.kind != "local_nano": raise NotImplementedError( - "Main entry currently wires only local_nano; tunix/maxtext land in M8/M9 " - "(see cts.backends.tunix_adapter / maxtext_adapter)." + f"Backend {cfg.backend.kind!r} not wired yet; see cts.backends.{cfg.backend.kind}_adapter." ) nano_cfg = NanoLMConfig( vocab_size=cfg.backend.nano.vocab_size, @@ -99,6 +111,16 @@ def main() -> None: print(f"[cts] step0 loss={float(loss):.4f}") print(f"[cts] metrics={ {k: float(v) for k, v in metrics.items()} }") + if args.gcs_bucket: + # Defer import so non-GCP runs don't pay for the dep. + import sys as _sys + + _deploy = Path(__file__).resolve().parents[3] / "deploy" + _sys.path.insert(0, str(_deploy)) + from gcs_sync import upload # type: ignore[import-not-found] + + upload("artifacts/", args.gcs_bucket.rstrip("/") + f"/{cfg.out_dir}") + if __name__ == "__main__": main() diff --git a/tests/integration/test_main_entry.py b/tests/integration/test_main_entry.py index b09e493..fc1c244 100644 --- a/tests/integration/test_main_entry.py +++ b/tests/integration/test_main_entry.py @@ -11,10 +11,19 @@ @pytest.mark.parametrize("method", ["sft", "dpo"]) def test_main_entry_runs(method: str): proc = subprocess.run( - [sys.executable, "-m", "cts.train.main", - f"method={method}", "task=fixtures_math", "backend=local_nano", - "trainer.max_steps=1", "trainer.batch_size=2"], - capture_output=True, text=True, timeout=120, + [ + sys.executable, + "-m", + "cts.train.main", + f"method={method}", + "task=fixtures_math", + "backend=local_nano", + "trainer.max_steps=1", + "trainer.batch_size=2", + ], + capture_output=True, + text=True, + timeout=120, ) assert proc.returncode == 0, proc.stderr assert "loss=" in proc.stdout or "step0" in proc.stdout diff --git a/tests/integration/test_methods_smoke.py b/tests/integration/test_methods_smoke.py index 5e7eea5..4b26111 100644 --- a/tests/integration/test_methods_smoke.py +++ b/tests/integration/test_methods_smoke.py @@ -56,7 +56,9 @@ def _mk_grpo_batch(model: NanoLM, B: int = 2, G: int = 2, T_in: int = 8, T_out: mask = jnp.ones((B, G, T_out)) old_lp = jax.random.normal(jax.random.PRNGKey(2), (B, G, T_out)) * 0.01 rewards = jax.random.uniform(jax.random.PRNGKey(3), (B, G)) - return GRPOBatch(prompt_ids=prompt, completion_ids=comp, mask=mask, logprobs_old=old_lp, rewards=rewards) + return GRPOBatch( + prompt_ids=prompt, completion_ids=comp, mask=mask, logprobs_old=old_lp, rewards=rewards + ) def test_b2_grpo_outcome(model_and_tok): diff --git a/tests/unit/test_bug_fixes.py b/tests/unit/test_bug_fixes.py index 570256c..9fabd32 100644 --- a/tests/unit/test_bug_fixes.py +++ b/tests/unit/test_bug_fixes.py @@ -31,11 +31,14 @@ def _grpo_batch(model, B=2, G=2, T_in=5, T_out=4): mask = jnp.ones((B, G, T_out)) old_lp = jnp.zeros((B, G, T_out)) rewards = jax.random.uniform(jax.random.PRNGKey(3), (B, G)) - return GRPOBatch(prompt_ids=prompt, completion_ids=comp, mask=mask, logprobs_old=old_lp, rewards=rewards) + return GRPOBatch( + prompt_ids=prompt, completion_ids=comp, mask=mask, logprobs_old=old_lp, rewards=rewards + ) # ---- Bug #1: GRPO next-token alignment --------------------------------------- + def test_grpo_token_logprobs_match_manual_alignment(): """The internal ``comp_slice`` must equal log π_θ(c_t | prompt + c_{ 0.0 @@ -205,6 +211,7 @@ def _changed(a, b): # ---- Bug #4: A5 freeze suppresses gradient to E_psi -------------------------- + def test_a5_freeze_zeros_energy_critic_grad(): """With cfg.energy.freeze=True, ∂L/∂ψ must be exactly zero, while gradient through R (inputs to the critic) is preserved so R* still moves.""" diff --git a/tests/unit/test_losses.py b/tests/unit/test_losses.py index d374a4e..d09896b 100644 --- a/tests/unit/test_losses.py +++ b/tests/unit/test_losses.py @@ -48,7 +48,9 @@ def test_alignment_dispatcher_routes(): b = jax.random.normal(rng, (2, 5, 4)) l2 = alignment_loss(a, b, AlignmentCfg(kind="l2", weight=1.0)) dtw = alignment_loss(a, b, AlignmentCfg(kind="soft_dtw", weight=1.0, gamma=1.0)) - sk = alignment_loss(a, b, AlignmentCfg(kind="sinkhorn", weight=1.0, num_iters=20, use_ott=False)) + sk = alignment_loss( + a, b, AlignmentCfg(kind="sinkhorn", weight=1.0, num_iters=20, use_ott=False) + ) zero = alignment_loss(a, b, AlignmentCfg(kind="sinkhorn", weight=0.0)) for v in (l2, dtw, sk): assert jnp.isfinite(v) diff --git a/tests/unit/test_verifier.py b/tests/unit/test_verifier.py index 61179a6..d4072ab 100644 --- a/tests/unit/test_verifier.py +++ b/tests/unit/test_verifier.py @@ -15,9 +15,11 @@ def test_math_verifier(): def test_code_verifier_pass_and_fail(): - v = CodeVerifier(tests={ - "ok": ["assert add(1,2) == 3"], - "bad": ["assert add(1,2) == 3"], - }) + v = CodeVerifier( + tests={ + "ok": ["assert add(1,2) == 3"], + "bad": ["assert add(1,2) == 3"], + } + ) assert v.score("ok", "def add(a,b):\n return a+b") == 1.0 assert 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