Issues

• Update tsm_mutcount link on tsm

  invalid
  Task

  rothlab/tileseqMave#128 · Filter by author dinosawrfish opened on Oct 1, 2026
  1

  

• Parameter validator rejects t0 input with multiple selection timepoints

  bug
  Bug

  rothlab/tileseqMave#127 · Filter by author dinosawrfish opened on Sep 30, 2026
  7

  

• Give Users Access to Gradient Thresholds for Genophenograms in MavevisLocal

  feature request
  Feature

  rothlab/tileseqMave#124 · Filter by author dinosawrfish opened on Sep 28, 2026
  2

  

• Make MAVEDB plot colors customizable

  feature request
  Feature

  rothlab/tileseqMave#121 · Filter by author dinosawrfish opened on Sep 23, 2026
  3

  

• mutcount: Crashes at alignment validation

  bug
  rothlab/tileseqMave#118 · Filter by author jweile opened on Jan 11, 2024

• mutcount: copy parameter sheet to output folder

  enhancement
  rothlab/tileseqMave#117 · Filter by author jweile opened on Jan 11, 2024

• --squash causes amino acid class labels to be squashed too

  bug
  rothlab/tileseqMave#85 · Filter by author jweile opened on Nov 10, 2021

• Disregard long in-frame deletions/insertions when calculating marginals

  enhancement
  rothlab/tileseqMave#78 · Filter by author jweile opened on Jun 4, 2021

• enrichment: Refuse modeling when good fits can't be found

  bug
  rothlab/tileseqMave#64 · Filter by author jweile opened on Jan 29, 2021

• libraryQC: refactor into modular subfunctions

  refactor
  rothlab/tileseqMave#49 · Filter by author jweile opened on Nov 6, 2020

• scoring: overhaul bottleneck filter

  enhancement
  rothlab/tileseqMave#48 · Filter by author jweile opened on Nov 6, 2020 · Scoring overhaul

• Scoring: Filter or flag variants by confidence interval

  feature request
  rothlab/tileseqMave#35 · Filter by author jweile opened on Aug 7, 2020 · Scoring overhaul

• scoring: Separate script version with early AA collapse?

  feature requestMajor change required
  rothlab/tileseqMave#32 · Filter by author jweile opened on Aug 5, 2020 · Scoring overhaul

• libraryQC: Add quality checks for variant caller

  feature request
  rothlab/tileseqMave#29 · Filter by author jweile opened on Jul 20, 2020

• Implement simple imputation as part of pipeline

  feature request
  rothlab/tileseqMave#28 · Filter by author jweile opened on Jul 20, 2020

• Re-implement marginalCount->MaveDB exporter

  feature request
  rothlab/tileseqMave#13 · Filter by author jweile opened on Jun 16, 2020

• Scoring for fluorescence

  feature request
  rothlab/tileseqMave#9 · Filter by author jweile opened on Jun 16, 2020
  2

• Write documentation for output interpretation

  feature request
  rothlab/tileseqMave#6 · Filter by author jweile opened on Jun 12, 2020