Skip to content

issues while running docker command plasmidID #23

Description

@alarawms

please update the the docker run parameter,
the docker executable: plasmidID.sh not plasmidID

docker run -v $PWD:$PWD -w $PWD buisciii/plasmidid plasmidID.sh
-1 test/KPN_TEST_R1.fastq.gz
-2 test/KPN_TEST_R2.fastq.gz
-d test/plasmids_TEST_database.fasta
-c test/contigs_KPN_TEST.fasta
--no-trim
-s KPN

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

Labels

bugSomething isn't working

Type

No type

Projects

No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions