Issues

• Handle fusion gene annotations (&) when importing variants into the database

  BU-ISCIII/relecov-tools#893 · Filter by author svarona opened on Aug 3, 2026

• Rename all references from relecov-tools to pathocore-tools

  BU-ISCIII/relecov-tools#890 · Filter by author Aberdur opened on Jun 2, 2026
  

• Update validate arg (check_db) in initial_config-relecov.yaml

  BU-ISCIII/relecov-tools#878 · Filter by author Aberdur opened on Mar 23, 2026

• Update taxprofiler yaml name in bioinfo_config.json

  BU-ISCIII/relecov-tools#876 · Filter by author victor5lm opened on Mar 17, 2026
  

• Bug on post-processing in read-lab metadata-dropdowns with enums

  bug
  BU-ISCIII/relecov-tools#872 · Filter by author ESapenaVentura opened on Mar 6, 2026

• Add INSaFLU to schema in lineage_assignment_software_name

  BU-ISCIII/relecov-tools#871 · Filter by author svarona opened on Mar 2, 2026

• Review integration of build_schema module changes in develop

  BU-ISCIII/relecov-tools#858 · Filter by author ESapenaVentura opened on Feb 12, 2026

• Outdated classification_filters list for 'relecov' in build_schema_config.json

  BU-ISCIII/relecov-tools#853 · Filter by author albatalavera opened on Feb 5, 2026
  

• Wrong error message when a non-valid sequencing instrument model is given

  bug
  BU-ISCIII/relecov-tools#851 · Filter by author Shettland opened on Jan 19, 2026

• Improve sequencing instrument model mapping in read-lab-metadata to avoid ambiguity

  bug
  BU-ISCIII/relecov-tools#850 · Filter by author Aberdur opened on Jan 12, 2026 · v1.8.0

• Investigate if we could use setter/getters for modules

  BU-ISCIII/relecov-tools#848 · Filter by author ESapenaVentura opened on Dec 16, 2025
  1

• Update modules from python 3.9 to 3.10

  BU-ISCIII/relecov-tools#847 · Filter by author ESapenaVentura opened on Dec 16, 2025
  

• relecov schema: Major changes

  BU-ISCIII/relecov-tools#837 · Filter by author ESapenaVentura opened on Dec 11, 2025
  

• relecov schema: minor changes

  BU-ISCIII/relecov-tools#836 · Filter by author ESapenaVentura opened on Dec 11, 2025
  

• support complex fields: read-bioinfor-metadata

  BU-ISCIII/relecov-tools#830 · Filter by author Daniel-VM opened on Dec 3, 2025
  

• Wrapper compression step does not update log_summary, causing mismatches between folder and metadata

  BU-ISCIII/relecov-tools#828 · Filter by author Aberdur opened on Dec 2, 2025
  

• Refactor relecov-tools metadata modules to support complex fields

  enhancement
  BU-ISCIII/relecov-tools#824 · Filter by author Daniel-VM opened on Nov 27, 2025
  

• Refactor build_schema module to integrate 'complex_field' information into 'type' column

  BU-ISCIII/relecov-tools#823 · Filter by author albatalavera opened on Nov 26, 2025
  

• Add iskylims upload to pipeline_manager and improve platform configuration

  BU-ISCIII/relecov-tools#773 · Filter by author saramonzon opened on Aug 5, 2025 · v1.7.3
  

• Add assertions for read-bioinfo-metadata

  BU-ISCIII/relecov-tools#746 · Filter by author Aberdur opened on Jul 24, 2025 · v1.8.0

• Add assertions for read-lab-metadata

  BU-ISCIII/relecov-tools#745 · Filter by author Aberdur opened on Jul 24, 2025 · v1.8.0

• Create module to be able to update Nextstrain on the platform

  BU-ISCIII/relecov-tools#732 · Filter by author victor5lm opened on Jul 22, 2025 · v1.8.0
  

• Review init modules

  BU-ISCIII/relecov-tools#692 · Filter by author saramonzon opened on Jun 23, 2025 · v1.8.0
  

• Improve github actions tests with assertions

  enhancement
  BU-ISCIII/relecov-tools#682 · Filter by author Shettland opened on Jun 18, 2025 · v1.8.0
  

• Update upload-to-ena Module to Use Webin REST V2 API

  enhancement
  BU-ISCIII/relecov-tools#456 · Filter by author Aberdur opened on Apr 21, 2025