fix(mimic-iii): load plain CSV in sqlite import.py (prefer .csv.gz) - #2149
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Chessing234 wants to merge 5 commits into
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fix(mimic-iii): load plain CSV in sqlite import.py (prefer .csv.gz)#2149Chessing234 wants to merge 5 commits into
Chessing234 wants to merge 5 commits into
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Use literal suffix stripping so table names are derived from .csv / .csv.gz paths without the historical str.strip class of bugs. Co-authored-by: Cursor <cursoragent@cursor.com>
Pin literal suffix stripping and .csv.gz preference so the loader stays aligned with import.sh. Co-authored-by: Cursor <cursoragent@cursor.com>
Gives the CSV discovery helpers a cheap, always-on check (requested when this change was reviewed out of a larger infra PR). Co-authored-by: Cursor <cursoragent@cursor.com>
Remove the outdated instruction to edit the script when files are uncompressed. Co-authored-by: Cursor <cursoragent@cursor.com>
Keep the always-on pytest job discoverable next to the SQLFluff notes. Co-authored-by: Cursor <cursoragent@cursor.com>
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Summary
import.pynow discovers plain.csvas well as.csv.gz, preferring gzip when both exist for the same table (parity withimport.sh).tests/test_mimic_iii_sqlite_import.pyand a PRunit-testsworkflow so CI verifies the behavior.Test plan
pytest tests/test_mimic_iii_sqlite_import.py -q.csvfiles besideimport.pyand confirm tables load without editing the scriptADMISSIONS.csvandADMISSIONS.csv.gzexist, confirm the gzip path is usedMade with Cursor