update data strategy with importable scripts - #28
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MikeLippincott merged 2 commits intoSep 16, 2026
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📝 WalkthroughWalkthroughThe pull request adds scripts for mounting Isilon and PetaLibrary storage, a dispatcher for mounting either or both systems, documentation for these workflows, and a Python package that resolves NAS paths or falls back to the Git repository root. ChangesNAS access tooling
Estimated code review effort: 3 (Moderate) | ~25 minutes Change: Feature Sequence Diagram(s)sequenceDiagram
participant User
participant mounting_nas.sh
participant mount_bandicoot.sh
participant mount_koala.sh
User->>mounting_nas.sh: Select a NAS mount option
mounting_nas.sh->>mount_bandicoot.sh: Run Isilon mount when selected
mounting_nas.sh->>mount_koala.sh: Run PetaLibrary mount when selected
mount_bandicoot.sh-->>User: Report Isilon result
mount_koala.sh-->>User: Report PetaLibrary result
Suggested reviewers: Merge Risk: 🟠 High · up to Common package and mounting workflows can fail or direct NAS data into local storage. These material correctness and security issues should be fixed before merging. 🚥 Pre-merge checks | ✅ 4 | ❌ 1❌ Failed checks (1 warning)
✅ Passed checks (4 passed)
Full details: Docstring CoverageExplanation Docstring coverage is 22.22% which is insufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 9 functions across 5 files. (4 skipped: 4 unsupported.)
✨ Finishing Touches🧪 Generate unit tests (beta)
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Actionable comments posted: 8
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Inline comments:
In `@data_strategy.md`:
- Line 224: Update data_strategy.md at lines 224-224 to state that
mount_koala.sh mounts only koala, and at lines 233-233 replace the incorrect
mount_nas.sh reference with mounting_nas.sh.
- Line 238: Correct the package API description to reference nas_path_check in
nas_path_package/core.py as returning only a path, and describe init_notebook as
the function returning root_dir and in_notebook. Remove the inaccurate
internal/nas_path_set.py and combined-return-value description.
- Line 227: Update both download-and-execute commands in data_strategy.md at
lines 227-227 and 233-233 to reference an immutable release or commit instead of
main, download the script to a file, verify its expected checksum or signature,
and execute it only after successful verification.
- Line 233: Update the documented mounting workflow around the mounting
dispatcher to first clone or download mount_nas.sh, mount_bandicoot.sh, and
mount_koala.sh into the same directory, then invoke the dispatcher from that
directory so its script-directory checks can locate both subordinate scripts.
In `@internal/mount_bandicoot.sh`:
- Line 97: Update the mount failure branch guarded by the if ! mount condition
to explicitly return a nonzero status after printing the error, instead of
leaving the commented exit. Preserve the existing successful mount path and
failure message.
In `@internal/nas_path_package/src/nas_path_package/core.py`:
- Line 30: Update the Git-root checks in the relevant path-discovery logic to
recognize both directory and file forms of .git, including linked worktrees.
Replace the is_dir-only validation around cwd and the corresponding second check
with existence-aware handling that avoids FileNotFoundError for valid worktree
roots.
- Line 84: Replace the nas_path.exists() check with an os.path.ismount check so
the NAS path is accepted only when its filesystem is actually mounted; otherwise
preserve the Git-root fallback. Update the corresponding tests to patch
os.path.ismount.
- Line 47: Update the root_dir default in the surrounding function definition so
init_notebook() is not called during module import; use a deferred fallback
inside the function while preserving explicitly supplied root_dir values.
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📒 Files selected for processing (9)
.gitignoredata_strategy.mdinternal/mount_bandicoot.shinternal/mount_koala.shinternal/mounting_nas.shinternal/nas_path_package/README.mdinternal/nas_path_package/pyproject.tomlinternal/nas_path_package/src/nas_path_package/core.pyinternal/nas_path_package/tests/test_core.py
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d33bs
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Sep 15, 2026
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With this I think you could be opinionated and offer up a proposed mechanism for deciding on "which storage?", updating it based on how you feel most valuable from feedback in the lab.
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This pull request adds robust, user-friendly scripts and a Python package to simplify mounting and programmatically accessing the Way Lab's NAS filesystems (
bandicootandkoala) across macOS and Linux. It introduces a new Python package for detecting NAS mount points or falling back to local storage, and updates documentation to help users quickly set up and use these tools. The changes focus on improving cross-platform compatibility, user guidance, and code portability.NAS Mounting Scripts and Automation
internal/mount_koala.sh, a cross-platform script to mount the PetaLibrary (koala) storage usingsshfs, with automatic installation of dependencies and user prompts for configuration.internal/mount_bandicoot.shto prompt for the Active Directory (AD) domain on macOS instead of hardcoding it, improving authentication troubleshooting. Added better error messages for failed mounts on both macOS and Linux. [1] [2] [3]internal/mounting_nas.sh, an interactive script to let users mountbandicoot,koala, or both at once, delegating to the appropriate mount scripts.Python Package for NAS Path Detection
internal/nas_path_package, a Python package withinit_notebookandnas_path_checkfunctions to detect NAS mount points or revert to the local Git repository root, enabling code portability between NAS and local environments. Includes apyproject.tomlfor packaging and a test suite. [1] [2] [3] [4]Documentation Updates
data_strategy.mdwith instructions for mounting NAS storage, using the new scripts, and programmatic access via the Python package. Installation and usage examples are provided for both shell scripts and Python functions. [1] [2]Minor Fixes and Improvements
These changes make it much easier for lab members to mount and access shared data, regardless of their operating system or environment, and ensure that code remains portable and robust.
Summary by CodeRabbit
New Features
Bug Fixes
Documentation
Chores