feat(pcsf): export PCSF network to Cytoscape (CX2) - #1789
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Conflict resolutions: - VERSION: keep edgy's 5.0-rc1+edgy260831 - components/board.pcsf/R/util_pcsf.R: edgy deleted the file as dead code, but devel's #1789 added pcsf.write_cx2() there and the PCSF panels call it. Restore the file with only pcsf.write_cx2(); visplot.PCSF() and plot.pcsf.NOTUSED() stay deleted (unreferenced in edgy). - components/ui/ui-PlotModule.R: stays deleted; PlotModuleServer now lives in bigdash. devel's download.handlers argument (used by the new CX2 export) is ported there in bigomics/bigdash#47. - components/board.upload/R/upload_module_preview_counts.R: keep edgy's unconditional datapath[1] (the filename gate was removed on purpose in d95d6a4) and layer devel's hPTM additions on top. Co-Authored-By: Claude Opus 5 (1M context) <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01TwCeAfAF9p965ed6nZUVjx
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Adds a "CX2" download option to the PCSF gene and geneset network plots. Exports the live graph nodes, edges, fold-change/prize, labels, weights, layout as a CX2 file that imports straight into Cytoscape