Issues

• Replicate processing gives 4 preps (due to demux_sample_sheet behavior)

  enhancement
  Feature

  biocore/kl-metapool#363 · Filter by author AmandaBirmingham opened on Jan 29, 2026
  2

• Implement local/CI stable test of iseqnormpool picklist contents for metaT notebook

  biocore/kl-metapool#354 · Filter by author AmandaBirmingham opened on Jan 7, 2026

• Refactor to remove duplicated sample_name to sample_id scrubbing logic

  biocore/kl-metapool#344 · Filter by author AmandaBirmingham opened on Nov 5, 2025

• Fix dependence on Illumina (only) file name format to determine sample name

  biocore/kl-metapool#341 · Filter by author AmandaBirmingham opened on Nov 3, 2025

• Write tests for/add NaN handling of dataframe input case of metapool.format_pooling_echo_pick_list()

  bug
  biocore/kl-metapool#340 · Filter by author AmandaBirmingham opened on Nov 1, 2025

• Refactor scripts (seqpro, seqpro_mf) and supporting classes into qp-klp

  biocore/kl-metapool#335 · Filter by author AmandaBirmingham opened on Sep 10, 2025

• Add replicate support for metatranscriptomics

  biocore/kl-metapool#324 · Filter by author AmandaBirmingham opened on Aug 27, 2025

• Centralize manipulation of de-replicated dataframe to PlateReplication

  enhancement
  biocore/kl-metapool#321 · Filter by author AmandaBirmingham opened on Aug 1, 2025

• Missing required sample sheet columns are filled in blank without triggering an error

  biocore/kl-metapool#305 · Filter by author AmandaBirmingham opened on Jun 13, 2025
  1

• Duplication of sample sheet field names in prep module

  biocore/kl-metapool#303 · Filter by author AmandaBirmingham opened on Jun 13, 2025

• Consolidate files to be either txt or csv.

  biocore/kl-metapool#285 · Filter by author antgonza opened on Apr 3, 2025

• Centralize or copy shared current metaG matrix tube functionality into amplicon notebook

  biocore/kl-metapool#274 · Filter by author AmandaBirmingham opened on Jan 13, 2025

• Centralize or copy shared current metaG matrix tube functionality into metaT notebook

  biocore/kl-metapool#273 · Filter by author AmandaBirmingham opened on Jan 13, 2025

• Change error to strong warning for duplicate sample names in sample accession files for matrix tube notebook?

  biocore/kl-metapool#272 · Filter by author AmandaBirmingham opened on Jan 13, 2025

• synDNA picklist should have all of column 1 of the LDV source plate listed (instead of only ‘A1’ would be ‘A1, B1, C1,…, P1’)

  biocore/kl-metapool#270 · Filter by author AmandaBirmingham opened on Jan 11, 2025
  1

• Plot in calculate_iseq_pooling_volumes() breaks if there is a Zero in read counts.

  biocore/kl-metapool#266 · Filter by author RodolfoSalido opened on Dec 19, 2024
  4

  

• 2+ projects in sample-sheets cannot share the same qiita-id

  biocore/kl-metapool#258 · Filter by author charles-cowart opened on Dec 5, 2024
  

• Replace seqpro binaries

  biocore/kl-metapool#257 · Filter by author charles-cowart opened on Dec 5, 2024

• Ensure NPH_calc_df_SLURRY.ipynb always pulls the latest abs_quant_sample_info_calc.yml from github

  biocore/kl-metapool#247 · Filter by author AmandaBirmingham opened on Nov 7, 2024

• add tests for new support for pooling file generation from multiple library plates

  enhancement
  biocore/kl-metapool#242 · Filter by author RodolfoSalido opened on Oct 9, 2024
  3

  

• Catch spaces in project name/abbreviation

  biocore/kl-metapool#240 · Filter by author cbrenchy opened on Oct 7, 2024
  5

• sample-sheets w/positive controls are fully descriptive

  biocore/kl-metapool#238 · Filter by author charles-cowart opened on Sep 23, 2024
  2

• Refactor use of strict parameter on sample_sheet.make_sample_sheet()

  biocore/kl-metapool#236 · Filter by author AmandaBirmingham opened on Aug 30, 2024
  1

• Newer sample-sheet types may not need a remapper.

  biocore/kl-metapool#235 · Filter by author charles-cowart opened on Aug 30, 2024

• merge_read_counts() function should have a robust regex expression for matching sample_names to filenames.

  biocore/kl-metapool#222 · Filter by author RodolfoSalido opened on Jul 30, 2024