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Add terms for (hyper)spectral microscopy and bioluminescence microscopy. - #72

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gouttegd merged 3 commits into
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chris-wood-ntrs
Oct 9, 2026
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gouttegd merged 3 commits into
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chris-wood-ntrs

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@gouttegd gouttegd commented Oct 9, 2026

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This PR adds:

Add "spectral microscopy" as a subterm of "light microscopy", defined as
"A light microscopy method in which spectral information is acquired
together with spatial image information, providing spectrally resolved
measurements at spatial locations within the image."

(The NTR in #68 requested "spectral imaging microscopy" as the preferred
label, but another NTR simultaneously requested "hyperspectral
microscopy" with "hyperspectral imaging microscopy" as a synonym. For
consistency, we are using the forms without "imaging" for the labels.)

closes #68
Add "hyperspectral microscopy" as a subterm of the newly added "spectral
microscopy".

closes #69
Add "bioluminescence imaging" to represent any method that uses
bioluminescence (rather than external illumination) (with or without a
microscope), and "bioluminescence microscopy" for any method that images
bioluminescence through a microscope.

closes #70
closes #71
@gouttegd gouttegd self-assigned this Oct 9, 2026
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gouttegd requested a review from lubianat October 9, 2026 12:07
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasSynonymType> <http://purl.obolibrary.org/obo/OMO_0003000>) <http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/FBbi_00100031> "BLI")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/FBbi_00100031> "bioluminescent imaging")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FBbi_00100031> "bioluminescence imaging")
SubClassOf(<http://purl.obolibrary.org/obo/FBbi_00100031> <http://purl.obolibrary.org/obo/FBbi_00000265>)

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I really dislike FBbi_00000265 label "recorded image"... but it is the right concept

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So do I. :) It’s one of the things I’d like to change as part of reorganizing the entire hierarchy, but that will have to wait.

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👍 ; any other changes in "light microscopy" or similar we can leave to the future.

@gouttegd
gouttegd merged commit c2cec97 into master Oct 9, 2026
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gouttegd deleted the chris-wood-ntrs branch October 9, 2026 17:54
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2 participants