singlecell_Agent

Run from the repository root:

python default.py \
  --code-dir saved_code_pbmc10k \
  --results-dir results_pbmc10k \
  --notes-dir notes_pbmc10k \
  --input_mod1 pbmc10k_annotated.h5ad \
  --opt-step 10 \
  --max-fix-step 10 \
  --time-budget 3600