Issues

• Update bacass's metro maps before 2.7.0 relese

  enhancement
  nf-core/bacass#322 · Filter by author Daniel-VM opened on Jul 30, 2026 · Release 2.7.0

• Rename branch name master to main

  enhancement
  nf-core/bacass#321 · Filter by author Daniel-VM opened on Jul 29, 2026

• Flye duplicated reads error with autocycler (v2.6.0)

  bug
  nf-core/bacass#312 · Filter by author lborcard opened on Jul 1, 2026 · Release 2.7.0
  2

• KmerFinder database FTP no longer available - tool renamed to SpeciesFinder

  enhancement
  nf-core/bacass#296 · Filter by author Daniel-VM opened on Apr 16, 2026 · Release 2.7.0
  3

• BadZipFile Error in download_reference.py - NCBI API returns non-ZIP data with HTTP 200

  bug
  nf-core/bacass#290 · Filter by author vaishnavpvarma opened on Mar 30, 2026

• Add dbCAN

  enhancement
  nf-core/bacass#280 · Filter by author brovolia opened on Mar 11, 2026

• Add genomad module

  enhancement
  nf-core/bacass#278 · Filter by author brovolia opened on Mar 11, 2026

• Add traitar module

  enhancement
  nf-core/bacass#277 · Filter by author brovolia opened on Mar 11, 2026

• Add GTDB-Tk for taxonomic info

  enhancement
  nf-core/bacass#274 · Filter by author d4straub opened on Mar 11, 2026 · Release 2.7.0
  

• Make "--assembly_type" optional (change default to 'auto')

  enhancementquestion
  nf-core/bacass#271 · Filter by author d4straub opened on Mar 2, 2026 · Release 2.7.0
  7

  

• JSON schema: Bacass

  nf-core/bacass#217 · Filter by author jen-reeve opened on Mar 25, 2025

• Add nº round of polishing (racon+minimap) ONT

  enhancement
  nf-core/bacass#214 · Filter by author jimmlucas opened on Mar 24, 2025
  

• Add genome rotation step to start chromosomes at dnaA

  enhancement
  nf-core/bacass#212 · Filter by author Daniel-VM opened on Mar 23, 2025
  1

  

• Add dnapler module (genome rotation to dnaA)

  enhancement
  nf-core/bacass#211 · Filter by author Daniel-VM opened on Mar 23, 2025

• Add gfastats module (structural assembly statistics)

  enhancement
  nf-core/bacass#209 · Filter by author Daniel-VM opened on Mar 23, 2025
  

• Add ciclator module (structural reorientation)

  enhancement
  nf-core/bacass#204 · Filter by author Daniel-VM opened on Mar 23, 2025

• Add when condition and stub section in local modules

  enhancement
  nf-core/bacass#200 · Filter by author Daniel-VM opened on Mar 21, 2025

• Addd a Nextflow configuration test profile to validate the KmerFinder step

  enhancement
  nf-core/bacass#197 · Filter by author Daniel-VM opened on Mar 14, 2025
  

• Error in racon step when running miniasm assembler

  bug
  nf-core/bacass#194 · Filter by author stefan-rooke opened on Feb 24, 2025
  1

  

• MultiQC Version 1.21 Parsing Issue

  enhancement
  nf-core/bacass#142 · Filter by author Daniel-VM opened on Jun 13, 2024

• Single end Illumina processing?

  enhancement
  nf-core/bacass#82 · Filter by author limey-bean opened on Mar 8, 2023
  1

• Add homopolish for nanopore-only assembly

  enhancementgood first issue
  nf-core/bacass#66 · Filter by author llk578496 opened on Sep 20, 2021
  2

  

• List of ideas to improve assemblies

  enhancementhelp wantedquestion
  nf-core/bacass#57 · Filter by author d4straub opened on Aug 19, 2021 · 2.1.0
  9