Important! Template update for nf-core/tools v4.1.0 by nf-core-bot · Pull Request #325 · nf-core/bacass

nf-core-bot · 2026-09-01T12:57:58Z

Version 4.1.0 of nf-core/tools has just been released with updates to the nf-core template. For more details, check out the blog post: https://nf-co.re/blog/2026/tools-4_1_0

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-4.1.0 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see the template sync documentation.

For more information about this release of nf-core/tools, please see the v4.1.0 release page.

Note

Since nf-core/tools 3.5.0, older template update PRs will not be automatically closed, but will remain open in your pipeline repository. Older template PRs will be automatically closed once a newer template PR has been merged.

…ge-4.1.0

github-actions · 2026-10-15T08:00:40Z

❌ nf-test failed with latest Nextflow version

Note

Tests with Nextflow's latest version failed but it will not cause a CI workflow failure.
Please check if the failure is expected with newer (edge-)releases of Nextflow or if it needs fixing.

❌ docker | latest-everything | Shard 15/15

See the full run for details.

github-actions · 2026-10-15T08:00:41Z

❌ nf-test failed with latest Nextflow version

Note

Tests with Nextflow's latest version failed but it will not cause a CI workflow failure.
Please check if the failure is expected with newer (edge-)releases of Nextflow or if it needs fixing.

❌ docker | latest-everything | Shard 9/15

See the full run for details.

github-actions · 2026-10-15T08:01:34Z

`nf-core pipelines lint` overall result: Passed ✅ ⚠️

Posted for pipeline commit 27597c0

+| ✅ 294 tests passed       |+
#| ❔   6 tests were ignored |#
#| ❔   1 tests had warnings |#
!| ❗   7 tests had warnings |!

Details

❗ Test warnings:

files_exist - File not found: conf/igenomes_ignored.config
pipeline_todos - TODO string in nextflow.config: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs
pipeline_todos - TODO string in README.md: Fill in short bullet-pointed list of the default steps in the pipeline
pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
pipeline_todos - TODO string in nextflow.config: Specify any additional parameters here
pipeline_todos - TODO string in CONTRIBUTING.md: Add any pipeline specific contribution guidelines here, such as coding styles, procedures, checklists etc.
pipeline_if_empty_null - ifEmpty(null) found in /home/runner/work/bacass/bacass/subworkflows/local/bakta_dbdownload_run/main.nf: _ versions = ch_versions.ifEmpty(null) // channel: [ path(versions.yml) ]
_

❔ Tests ignored:

files_exist - File is ignored: conf/igenomes.config
files_exist - File is ignored: .github/workflows/linting_comment.yml
nextflow_config - Config default ignored: params.dfast_config
files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
files_unchanged - File ignored due to lint config: .github/workflows/branch.yml
files_unchanged - File ignored due to lint config: .github/workflows/linting.yml

❔ Tests fixed:

rocrate_readme_sync - Mismatch fixed: RO-Crate description updated from README.md.

✅ Tests passed:

files_exist - File found: .gitattributes
files_exist - File found: .gitignore
files_exist - File found: .nf-core.yml
files_exist - File found: .prettierignore
files_exist - File found: .prettierrc.yml
files_exist - File found: CHANGELOG.md
files_exist - File found: CITATIONS.md
files_exist - File found: CODE_OF_CONDUCT.md
files_exist - File found: LICENSE or LICENSE.md or LICENCE or LICENCE.md
files_exist - File found: nextflow_schema.json
files_exist - File found: nextflow.config
files_exist - File found: README.md
files_exist - File found: .github/.dockstore.yml
files_exist - File found: .github/ISSUE_TEMPLATE/bug_report.yml
files_exist - File found: .github/ISSUE_TEMPLATE/config.yml
files_exist - File found: .github/ISSUE_TEMPLATE/feature_request.yml
files_exist - File found: .github/PULL_REQUEST_TEMPLATE.md
files_exist - File found: .github/workflows/branch.yml
files_exist - File found: .github/workflows/nf-test.yml
files_exist - File found: .github/actions/get-shards/action.yml
files_exist - File found: .github/actions/nf-test/action.yml
files_exist - File found: .github/workflows/pr-comment.yml
files_exist - File found: .github/workflows/linting.yml
files_exist - File found: assets/email_template.html
files_exist - File found: assets/email_template.txt
files_exist - File found: assets/sendmail_template.txt
files_exist - File found: assets/nf-core-bacass_logo_light.png
files_exist - File found: conf/modules.config
files_exist - File found: conf/test.config
files_exist - File found: conf/test_full.config
files_exist - File found: docs/CONTRIBUTING.md
files_exist - File found: docs/images/nf-core-bacass_logo_light.png
files_exist - File found: docs/images/nf-core-bacass_logo_dark.png
files_exist - File found: docs/output.md
files_exist - File found: docs/README.md
files_exist - File found: docs/README.md
files_exist - File found: docs/usage.md
files_exist - File found: nf-test.config
files_exist - File found: tests/default.nf.test
files_exist - File found: main.nf
files_exist - File found: assets/multiqc_config.yml
files_exist - File found: conf/base.config
files_exist - File found: .github/workflows/awstest.yml
files_exist - File found: .github/workflows/awsfulltest.yml
files_exist - File found: modules.json
files_exist - File found: ro-crate-metadata.json
files_exist - File not found check: .github/ISSUE_TEMPLATE/bug_report.md
files_exist - File not found check: .github/ISSUE_TEMPLATE/feature_request.md
files_exist - File not found check: .github/workflows/push_dockerhub.yml
files_exist - File not found check: .markdownlint.yml
files_exist - File not found check: .nf-core.yaml
files_exist - File not found check: .yamllint.yml
files_exist - File not found check: bin/markdown_to_html.r
files_exist - File not found check: conf/aws.config
files_exist - File not found check: docs/images/nf-core-bacass_logo.png
files_exist - File not found check: lib/Checks.groovy
files_exist - File not found check: lib/Completion.groovy
files_exist - File not found check: lib/NfcoreTemplate.groovy
files_exist - File not found check: lib/Utils.groovy
files_exist - File not found check: lib/Workflow.groovy
files_exist - File not found check: lib/WorkflowMain.groovy
files_exist - File not found check: lib/WorkflowBacass.groovy
files_exist - File not found check: parameters.settings.json
files_exist - File not found check: pipeline_template.yml
files_exist - File not found check: Singularity
files_exist - File not found check: lib/nfcore_external_java_deps.jar
files_exist - File not found check: .travis.yml
nextflow_config - Found nf-schema plugin
nextflow_config - Config variable found: manifest.name
nextflow_config - Config variable found: manifest.nextflowVersion
nextflow_config - Config variable found: manifest.description
nextflow_config - Config variable found: manifest.version
nextflow_config - Config variable found: manifest.homePage
nextflow_config - Config variable found: timeline.enabled
nextflow_config - Config variable found: trace.enabled
nextflow_config - Config variable found: report.enabled
nextflow_config - Config variable found: dag.enabled
nextflow_config - Config variable found: process.cpus
nextflow_config - Config variable found: process.memory
nextflow_config - Config variable found: process.time
nextflow_config - Config variable found: params.outdir
nextflow_config - Config variable found: params.input
nextflow_config - Config variable found: manifest.mainScript
nextflow_config - Config variable found: timeline.file
nextflow_config - Config variable found: trace.file
nextflow_config - Config variable found: report.file
nextflow_config - Config variable found: dag.file
nextflow_config - Config variable (correctly) not found: params.nf_required_version
nextflow_config - Config variable (correctly) not found: params.container
nextflow_config - Config variable (correctly) not found: params.singleEnd
nextflow_config - Config variable (correctly) not found: params.igenomesIgnore
nextflow_config - Config variable (correctly) not found: params.name
nextflow_config - Config variable (correctly) not found: params.enable_conda
nextflow_config - Config variable (correctly) not found: params.max_cpus
nextflow_config - Config variable (correctly) not found: params.max_memory
nextflow_config - Config variable (correctly) not found: params.max_time
nextflow_config - Config variable (correctly) not found: params.validationFailUnrecognisedParams
nextflow_config - Config variable (correctly) not found: params.validationLenientMode
nextflow_config - Config variable (correctly) not found: params.validationSchemaIgnoreParams
nextflow_config - Config variable (correctly) not found: params.validationShowHiddenParams
nextflow_config - Config variable (correctly) not found: validation.failUnrecognisedParams
nextflow_config - Config variable (correctly) not found: validation.failUnrecognisedHeaders
nextflow_config - Config timeline.enabled had correct value: True
nextflow_config - Config report.enabled had correct value: True
nextflow_config - Config trace.enabled had correct value: True
nextflow_config - Config dag.enabled had correct value: True
nextflow_config - Config manifest.name began with nf-core/
nextflow_config - Config manifest.homePage began with https://github.com/nf-core/
nextflow_config - Config dag.file ended with .html
nextflow_config - Config variable manifest.nextflowVersion started with >= or !>=
nextflow_config - Config manifest.version ends in dev: 2.7.0dev
nextflow_config - Config params.custom_config_version is set to master
nextflow_config - Config params.custom_config_base is set to https://raw.githubusercontent.com/nf-core/configs/master
nextflow_config - Lines for loading custom profiles found
nextflow_config - nextflow.config contains configuration profile test
nextflow_config - Config default value correct: params.discard_trimmed_pass= false
nextflow_config - Config default value correct: params.long_reads_filtering= porechop
nextflow_config - Config default value correct: params.filtlong_minlen= 10
nextflow_config - Config default value correct: params.rasusa= false
nextflow_config - Config default value correct: params.rasusa_coverage= 100
nextflow_config - Config default value correct: params.assembler= autocycler,canu,dragonflye,flye,megahit,miniasm,unicycler,raven
nextflow_config - Config default value correct: params.assembly_type= auto
nextflow_config - Config default value correct: params.assembly_type_label= true
nextflow_config - Config default value correct: params.autocycler_assemblers= canu,flye,miniasm,raven
nextflow_config - Config default value correct: params.autocycler_subsample_count= 4
nextflow_config - Config default value correct: params.autocycler_subsample_mindepth= 25
nextflow_config - Config default value correct: params.flye_mode= --nano-raw
nextflow_config - Config default value correct: params.busco_lineage= bacteria_odb10
nextflow_config - Config default value correct: params.busco_mode= genome
nextflow_config - Config default value correct: params.busco_clean_intermediates= false
nextflow_config - Config default value correct: params.polish_method= medaka
nextflow_config - Config default value correct: params.annotation_tool= prokka
nextflow_config - Config default value correct: params.baktadb_download_args= --type light
nextflow_config - Config default value correct: params.custom_config_version= master
nextflow_config - Config default value correct: params.custom_config_base= https://raw.githubusercontent.com/nf-core/configs/master
nextflow_config - Config default value correct: params.publish_dir_mode= copy
nextflow_config - Config default value correct: params.max_multiqc_email_size= 25.MB
nextflow_config - Config default value correct: params.validate_params= true
nextflow_config - Config default value correct: params.pipelines_testdata_base_path= https://raw.githubusercontent.com/nf-core/test-datasets/
nf_test_content - 'tests/hybrid.nf.test' contains outdir parameter
nf_test_content - 'tests/hybrid.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/hybrid.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_miniasm.nf.test' contains outdir parameter
nf_test_content - 'tests/long_miniasm.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_miniasm.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_liftoff.nf.test' contains outdir parameter
nf_test_content - 'tests/long_liftoff.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_liftoff.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_autocycler.nf.test' contains outdir parameter
nf_test_content - 'tests/long_autocycler.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_autocycler.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/short_megahit.nf.test' contains outdir parameter
nf_test_content - 'tests/short_megahit.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/short_megahit.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/assembly_type_assembler_compat.nf.test' contains outdir parameter
nf_test_content - 'tests/assembly_type_assembler_compat.nf.test' contains outdir parameter
nf_test_content - 'tests/assembly_type_assembler_compat.nf.test' contains outdir parameter
nf_test_content - 'tests/assembly_type_assembler_compat.nf.test' contains outdir parameter
nf_test_content - 'tests/assembly_type_assembler_compat.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long.nf.test' contains outdir parameter
nf_test_content - 'tests/long.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_rasusa.nf.test' contains outdir parameter
nf_test_content - 'tests/long_rasusa.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_rasusa.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_miniasm_prokka.nf.test' contains outdir parameter
nf_test_content - 'tests/long_miniasm_prokka.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_miniasm_prokka.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/dfast.nf.test' contains outdir parameter
nf_test_content - 'tests/dfast.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/dfast.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_dragonflye.nf.test' contains outdir parameter
nf_test_content - 'tests/long_dragonflye.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_dragonflye.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_multiassembler.nf.test' contains outdir parameter
nf_test_content - 'tests/long_multiassembler.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/long_multiassembler.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/auto_assembly_mode.nf.test' contains outdir parameter
nf_test_content - 'tests/auto_assembly_mode.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/auto_assembly_mode.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/hybrid_dragonflye.nf.test' contains outdir parameter
nf_test_content - 'tests/hybrid_dragonflye.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/hybrid_dragonflye.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/default.nf.test' contains outdir parameter
nf_test_content - 'tests/default.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/default.nf.test' snapshots a 'versions.yml' file
nf_test_content - 'tests/nextflow.config' contains modules_testdata_base_path
nf_test_content - 'tests/nextflow.config' contains pipelines_testdata_base_path
nf_test_content - 'nf-test.config' sets a testsDir
nf_test_content - 'nf-test.config' sets a workDir
nf_test_content - 'nf-test.config' sets a configFile
files_unchanged - .gitattributes matches the template
files_unchanged - .prettierrc.yml matches the template
files_unchanged - CODE_OF_CONDUCT.md matches the template
files_unchanged - LICENSE matches the template
files_unchanged - .github/.dockstore.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/bug_report.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/config.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/feature_request.yml matches the template
files_unchanged - .github/workflows/pr-comment.yml matches the template
files_unchanged - assets/email_template.html matches the template
files_unchanged - assets/email_template.txt matches the template
files_unchanged - assets/sendmail_template.txt matches the template
files_unchanged - assets/nf-core-bacass_logo_light.png matches the template
files_unchanged - docs/images/nf-core-bacass_logo_light.png matches the template
files_unchanged - docs/images/nf-core-bacass_logo_dark.png matches the template
files_unchanged - docs/README.md matches the template
files_unchanged - .gitignore matches the template
files_unchanged - .prettierignore matches the template
actions_nf_test - '.github/workflows/nf-test.yml' is triggered on expected events
actions_nf_test - '.github/workflows/nf-test.yml' checks minimum NF version
actions_awstest - '.github/workflows/awstest.yml' is triggered correctly
actions_awsfulltest - .github/workflows/awsfulltest.yml is triggered correctly
actions_awsfulltest - .github/workflows/awsfulltest.yml does not use -profile test
readme - README Nextflow minimum version badge matched config. Badge: 25.10.4, Config: 25.10.4
readme - README nf-core template version badge found.
readme - README Zenodo placeholder was replaced with DOI.
plugin_includes - No wrong validation plugin imports have been found
pipeline_name_conventions - Name adheres to nf-core convention
template_strings - Did not find any Jinja template strings (0 files)
schema_lint - Schema lint passed
schema_lint - Schema title + description lint passed
schema_lint - Input mimetype lint passed: 'text/csv'
schema_params - Schema matched params returned from nextflow config
system_exit - No System.exit calls found
actions_schema_validation - Workflow validation passed: pr-comment.yml
actions_schema_validation - Workflow validation passed: branch.yml
actions_schema_validation - Workflow validation passed: nf-test.yml
actions_schema_validation - Workflow validation passed: awsfulltest.yml
actions_schema_validation - Workflow validation passed: download_pipeline.yml
actions_schema_validation - Workflow validation passed: awstest.yml
actions_schema_validation - Workflow validation passed: clean-up.yml
actions_schema_validation - Workflow validation passed: template-version-comment.yml
actions_schema_validation - Workflow validation passed: fix_linting.yml
actions_schema_validation - Workflow validation passed: linting.yml
actions_schema_validation - Workflow validation passed: release-announcements.yml
merge_markers - No merge markers found in pipeline files
modules_json - Only installed modules found in modules.json
multiqc_config - assets/multiqc_config.yml found and not ignored.
multiqc_config - assets/multiqc_config.yml contains report_section_order
multiqc_config - assets/multiqc_config.yml contains export_plots
multiqc_config - assets/multiqc_config.yml contains report_comment
multiqc_config - assets/multiqc_config.yml follows the ordering scheme of the minimally required plugins.
multiqc_config - assets/multiqc_config.yml contains a matching 'report_comment'.
multiqc_config - assets/multiqc_config.yml contains 'export_plots: true'.
modules_structure - modules directory structure is correct 'modules/nf-core/TOOL/SUBTOOL'
local_component_structure - local subworkflows directory structure is correct 'subworkflows/local/TOOL/SUBTOOL'
base_config - conf/base.config found and not ignored.
modules_config - conf/modules.config found and not ignored.
modules_config - NANOPLOT found in conf/modules.config and Nextflow scripts.
modules_config - TOULLIGQC found in conf/modules.config and Nextflow scripts.
modules_config - PYCOQC found in conf/modules.config and Nextflow scripts.
modules_config - PORECHOP_PORECHOP found in conf/modules.config and Nextflow scripts.
modules_config - FILTLONG found in conf/modules.config and Nextflow scripts.
modules_config - AUTOCYCLER_SUBSAMPLE found in conf/modules.config and Nextflow scripts.
modules_config - RASUSA found in conf/modules.config and Nextflow scripts.
modules_config - UNICYCLER found in conf/modules.config and Nextflow scripts.
modules_config - CANU found in conf/modules.config and Nextflow scripts.
modules_config - MINIMAP2_ALIGN found in conf/modules.config and Nextflow scripts.
modules_config - MINIMAP2_CONSENSUS found in conf/modules.config and Nextflow scripts.
modules_config - MINIMAP2_POLISH found in conf/modules.config and Nextflow scripts.
modules_config - MINIASM found in conf/modules.config and Nextflow scripts.
modules_config - RACON found in conf/modules.config and Nextflow scripts.
modules_config - DRAGONFLYE found in conf/modules.config and Nextflow scripts.
modules_config - MEGAHIT found in conf/modules.config and Nextflow scripts.
modules_config - RAVEN found in conf/modules.config and Nextflow scripts.
modules_config - FLYE found in conf/modules.config and Nextflow scripts.
modules_config - AUTOCYCLER_CLUSTER found in conf/modules.config and Nextflow scripts.
modules_config - AUTOCYCLER_TRIM found in conf/modules.config and Nextflow scripts.
modules_config - AUTOCYCLER_RESOLVE found in conf/modules.config and Nextflow scripts.
modules_config - AUTOCYCLER_COMBINE found in conf/modules.config and Nextflow scripts.
modules_config - MEDAKA found in conf/modules.config and Nextflow scripts.
modules_config - NANOPOLISH found in conf/modules.config and Nextflow scripts.
modules_config - KRAKEN2 found in conf/modules.config and Nextflow scripts.
modules_config - KRAKEN2_LONG found in conf/modules.config and Nextflow scripts.
modules_config - QUAST found in conf/modules.config and Nextflow scripts.
modules_config - QUAST_BYSAMPLE found in conf/modules.config and Nextflow scripts.
modules_config - QUAST_BYREFSEQID found in conf/modules.config and Nextflow scripts.
modules_config - BUSCO_BUSCO found in conf/modules.config and Nextflow scripts.
modules_config - PROKKA found in conf/modules.config and Nextflow scripts.
modules_config - DFAST found in conf/modules.config and Nextflow scripts.
modules_config - LIFTOFF found in conf/modules.config and Nextflow scripts.
modules_config - CUSTOM_MULTIQC found in conf/modules.config and Nextflow scripts.
nfcore_yml - Repository type in .nf-core.yml is valid: pipeline
nfcore_yml - nf-core version in .nf-core.yml is set to the latest version: 4.1.0
rocrate_readme_sync - RO-Crate description matches the README.md.
container_configs - conf/containers_conda_lock_files_amd64.config is up to date
container_configs - conf/containers_conda_lock_files_arm64.config is up to date
container_configs - conf/containers_docker_amd64.config is up to date
container_configs - conf/containers_docker_arm64.config is up to date
container_configs - conf/containers_singularity_https_amd64.config is up to date
container_configs - conf/containers_singularity_https_arm64.config is up to date
container_configs - conf/containers_singularity_oras_amd64.config is up to date
container_configs - conf/containers_singularity_oras_arm64.config is up to date

Run details

nf-core/tools version 4.1.0
Run at 2026-10-15 13:49:06

d4straub

LGTM, just minor comments.

Daniel-VM · 2026-10-15T14:25:14Z

Thanks @d4straub

nf-core-bot and others added 5 commits April 28, 2026 11:20

Template update for nf-core/tools version 4.0.0

46a2747

Template update for nf-core/tools version 4.0.2

724be71

Template update for nf-core/tools version 4.0.3

024377d

Template update for nf-core/tools version 4.1.0

bf8f8d5

Merge remote-tracking branch 'upstream/dev' into nf-core-template-mer…

45991c6

…ge-4.1.0

Daniel-VM added 3 commits October 15, 2026 10:05

recover monochrome_logs from template

3c60588

fixed prek in #325

4097aa4

update snapshots and test

4491822

d4straub approved these changes Oct 15, 2026

View reviewed changes

Comment thread .github/workflows/awsfulltest.yml Resolved

Comment thread tests/auto_assembly_mode.nf.test.snap Resolved

Comment thread tests/default.nf.test.snap Resolved

Comment thread README.md Resolved

Daniel-VM added 2 commits October 15, 2026 15:25

add reviewer suggestion in #325

9bda92c

fix snaps

27597c0

Daniel-VM merged commit 1994c45 into dev Oct 15, 2026
36 checks passed

Daniel-VM deleted the nf-core-template-merge-4.1.0 branch October 15, 2026 14:25

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Important! Template update for nf-core/tools v4.1.0 - #325

Important! Template update for nf-core/tools v4.1.0#325
Daniel-VM merged 10 commits into
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nf-core-template-merge-4.1.0

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❗ Test warnings:

❔ Tests ignored:

❔ Tests fixed:

✅ Tests passed:

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❌ nf-test failed with latest Nextflow version

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github-actions Bot commented Oct 15, 2026

❌ nf-test failed with latest Nextflow version

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github-actions Bot commented Oct 15, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

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nf-core pipelines lint overall result: Passed ✅ ⚠️

❗ Test warnings:

❔ Tests ignored:

❔ Tests fixed:

✅ Tests passed:

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Daniel-VM commented Oct 15, 2026

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github-actions Bot commented Oct 15, 2026 •

edited

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github-actions Bot commented Oct 15, 2026 •

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`nf-core pipelines lint` overall result: Passed ✅ ⚠️