Issues

• parallization of wfmash_chunks not working

  nf-core/pangenome#256 · Filter by author nexejwre opened on Jul 17, 2026
  1

• [question] does it matter what type of assembly I use? long, short, both?

  nf-core/pangenome#247 · Filter by author JWDebler opened on May 25, 2025

• Run pipeline with vg deconstruct parameters CI action takes too long

  enhancement
  nf-core/pangenome#245 · Filter by author heuermh opened on Apr 30, 2025
  1

• Adding input files for Panache

  enhancement
  nf-core/pangenome#197 · Filter by author mictadlo opened on Apr 11, 2024
  3

• Adding jbrowse visualization

  enhancement
  nf-core/pangenome#196 · Filter by author mictadlo opened on Apr 11, 2024
  5

• Compile SMOOTHXG for several kinds of SIMD flavours

  advancedenhancement
  nf-core/pangenome#190 · Filter by author subwaystation opened on Mar 15, 2024

• Towards IMplicit Pangenome Graph Construction Tools

  advancedenhancement
  nf-core/pangenome#189 · Filter by author subwaystation opened on Mar 15, 2024

• automatically detect the number of input haplotypes

  enhancement
  nf-core/pangenome#158 · Filter by author subwaystation opened on Oct 27, 2023

• assume pansn-spec in wfmash parameters to enfoce lower-triangular mapping

  enhancement
  nf-core/pangenome#156 · Filter by author subwaystation opened on Oct 27, 2023
  4

• Integrate panacus as a quantitative quality control tool and pangenome growth curve generator

  enhancement
  nf-core/pangenome#151 · Filter by author subwaystation opened on Sep 6, 2023

• Check if input sequence identifiers follow the PanSN-Spec

  enhancement
  nf-core/pangenome#139 · Filter by author subwaystation opened on Aug 17, 2023
  2

• Use grabix to detect compression mode of FASTA input.

  enhancement
  nf-core/pangenome#121 · Filter by author subwaystation opened on Apr 17, 2023
  2