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    55 repositories

    • AtomisticSkills

      Public
      Intergrating Atomistic Skills into Agentic IDEs (Cursor, Claude Code, Google Antigravity, OpenClaw, etc)
      Python
      •
      MIT License
      •24•161•0•0•Updated Sep 3, 2026Sep 3, 2026

    • ReactionGraphNeuralNetwork

      Public
      Graph Neural Network to predict the reaction related properties for reinforcement learning
      Python
      •
      MIT License
      •0•2•0•0•Updated Aug 27, 2026Aug 27, 2026

    • peptimizer

      Public
      Peptide optimization with Machine Learning
      Jupyter Notebook
      •
      MIT License
      •30•83•0•0•Updated Aug 21, 2026Aug 21, 2026

    • NeuralForceField

      Public
      Neural Network Force Field based on PyTorch
      Jupyter Notebook
      •
      MIT License
      •61•293•4•1•Updated Jul 13, 2026Jul 13, 2026

    • alm

      Public
      Atomistic Language Models unify natural language and atomistics to understand, generate, and optimize materials. https://arxiv.org/abs/2606.21395
      Python
      •
      Apache License 2.0
      •0•5•0•0•Updated Jun 27, 2026Jun 27, 2026

    • RLVacDiffSim

      Public
      Reinforcement learning driven simulation of vacancy diffusion
      Python
      •3•4•0•1•Updated May 31, 2026May 31, 2026

    • HiTPoly

      Public
      A platform for setting up high throughput polymer electrolyte MD simulations.
      Python
      •
      MIT License
      •4•23•0•1•Updated May 9, 2026May 9, 2026

    • FROMP-from-monomer

      Public
      Mechanism-based reaction-diffusion model to predict FROMP front propagation from monomer molecular descriptors.
      Python
      •
      MIT License
      •0•1•0•0•Updated Apr 20, 2026Apr 20, 2026

    • ligpargen

      Public
      Update LigParGen version from Leela Sriram Dodda
      Python
      •0•0•1•0•Updated Mar 31, 2026Mar 31, 2026

    • XRD-GD

      Public
      Code for XRD-based structure optimization that was used in the study presented in "The Loss Landscape of Powder X-Ray Diffraction-Based Structure Optimization I…
      Python
      •
      MIT License
      •0•9•0•0•Updated Mar 30, 2026Mar 30, 2026

    • surface-sampling

      Public
      MCMC-based algorithm for sampling surface reconstructions
      Jupyter Notebook
      •
      MIT License
      •8•45•0•0•Updated Mar 1, 2026Mar 1, 2026

    • matex

      Public
      Code for extrapolation in materials property prediction as proposed in "Known Unknowns: Out-of-Distribution Property Prediction in Materials and Molecules".
      Python
      •
      MIT License
      •5•34•1•0•Updated Jan 16, 2026Jan 16, 2026

    • LLM4BO

      Public
      Benchmarking different LLM approaches for Bayesian optimization
      Jupyter Notebook
      •
      MIT License
      •0•10•0•0•Updated Dec 12, 2025Dec 12, 2025

    • PoTS

      Public
      This repository provides scripts to generate vibrational displacement modes for DIMER transition state (TS) searches in crystalline structures.
      zeolitescatalysisdimer
      zeolitescatalysisdimertransitionstate
      Python
      •
      MIT License
      •0•6•0•0•Updated Dec 11, 2025Dec 11, 2025

    • liflow

      Public
      Flow matching for accelerated simulation of atomic transport
      Python
      •
      MIT License
      •6•69•5•0•Updated Oct 17, 2025Oct 17, 2025

    • symmetry-mcts

      Public
      Molecular generation with constraints on symmetry of fragment connectivity
      Jupyter Notebook
      •0•4•0•0•Updated Sep 13, 2025Sep 13, 2025

    • VOID

      Public
      Library to dock molecules in crystal structures, including nanoporous materials
      Python
      •
      MIT License
      •8•14•3•0•Updated Sep 13, 2025Sep 13, 2025

    • mepin

      Public
      Transferable learning of reaction pathways
      Python
      •
      MIT License
      •1•10•1•0•Updated Sep 9, 2025Sep 9, 2025

    • uvvisml

      Public
      Predict optical properties of molecules with machine learning.
      machine-learningdeep-learningcheminformatics
      machine-learningdeep-learningcheminformaticsspectroscopyuvvis-spectroscopymolecular-property-prediction
      Jupyter Notebook
      •
      MIT License
      •11•37•0•1•Updated Jul 30, 2025Jul 30, 2025

    • Uncertainty_eABF-GaMD

      Public
      Updated and maintained branch of Aik Rui's uncertainty GaMD-eABF repository
      Python
      •2•2•0•0•Updated Jul 30, 2025Jul 30, 2025

    • zeobind

      Public
      Jupyter Notebook
      •
      MIT License
      •0•8•0•0•Updated May 19, 2025May 19, 2025

    • AutoBADDIE

      Public
      Autonomously train class 1 and class 2 interatomic potentials for MD using gas-phase DFT training data
      Python
      •
      MIT License
      •1•5•0•0•Updated Feb 5, 2025Feb 5, 2025

    • ZeoliteSynMetrics

      Public
      Repository for recreating plots and analysis for SISSO-developed metrics to predict zeolite synthesis outcomes
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Dec 4, 2024Dec 4, 2024

    • alchemical-mlip

      Public
      Alchemical machine learning interatomic potentials
      Jupyter Notebook
      •
      MIT License
      •7•39•2•0•Updated Nov 8, 2024Nov 8, 2024

    • PerovskiteOrderingGCNNs

      Public
      Repo for our paper "Learning Ordering in Crystalline Materials with Symmetry-Aware Graph Neural Networks"
      Jupyter Notebook
      •
      MIT License
      •5•8•0•0•Updated Sep 24, 2024Sep 24, 2024

    • geodesic-interpolation-cv

      Public
      Geodesic interpolation for collective variables
      Jupyter Notebook
      •
      MIT License
      •0•8•0•0•Updated Aug 16, 2024Aug 16, 2024

    • SingleAtom-LocalEnv

      Public
      Active learning accelerated exploration of the single atom local environments in multimetallic systems for oxygen electrocatalysis
      Python
      •1•8•0•0•Updated Aug 9, 2024Aug 9, 2024

    • Chem-prop-pred

      Public
      Repository for predicting conductivities through Arrhenius parameters for polymer electrolytes.
      Python
      •
      MIT License
      •9•27•3•0•Updated Jul 29, 2024Jul 29, 2024

    • Perovskite-Ordering-Descriptors

      Public
      Repo for our paper "Data-Driven Physics-Informed Descriptors of Cation Ordering in Multicomponent Perovskite Oxides"
      Jupyter Notebook
      •
      MIT License
      •4•4•0•0•Updated Apr 30, 2024Apr 30, 2024

    • Segal

      Public
      Jupyter Notebook
      •
      MIT License
      •2•10•0•0•Updated Mar 16, 2024Mar 16, 2024
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