Repositories list

• rsomics-world

  Public
  Python

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-world•00 stars in omics-rust/rsomics-world•00 issues in omics-rust/rsomics-world•00 pull requests in omics-rust/rsomics-world•Updated Oct 22, 2026Oct 22, 2026

• rsomics-kmer

  Public
  K-mer encoding, canonicalisation, ntHash rolling hash, MurmurHash3, k-mer counting for the rsomics-* tool family. Layer A primitive.

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-kmer•00 stars in omics-rust/rsomics-kmer•00 issues in omics-rust/rsomics-kmer•00 pull requests in omics-rust/rsomics-kmer•Updated Sep 8, 2026Sep 8, 2026

• rsomics-sketch

  Public
  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-sketch•00 stars in omics-rust/rsomics-sketch•00 issues in omics-rust/rsomics-sketch•00 pull requests in omics-rust/rsomics-sketch•Updated Sep 8, 2026Sep 8, 2026

• rsomics-index

  Public
  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-index•00 stars in omics-rust/rsomics-index•00 issues in omics-rust/rsomics-index•00 pull requests in omics-rust/rsomics-index•Updated Sep 8, 2026Sep 8, 2026

• rsomics-bed

  Public
  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-bed•00 stars in omics-rust/rsomics-bed•00 issues in omics-rust/rsomics-bed•00 pull requests in omics-rust/rsomics-bed•Updated Aug 20, 2026Aug 20, 2026

• rsomics-table

  Public
  High-performance CSV and TSV workflows for bioinformatics

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-table•00 stars in omics-rust/rsomics-table•00 issues in omics-rust/rsomics-table•00 pull requests in omics-rust/rsomics-table•Updated Aug 19, 2026Aug 19, 2026

• rsomics-vcf

  Public
  VCF and BCF workflows in Rust

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-vcf•00 stars in omics-rust/rsomics-vcf•00 issues in omics-rust/rsomics-vcf•00 pull requests in omics-rust/rsomics-vcf•Updated Aug 19, 2026Aug 19, 2026

• rsomics-bam

  Public
  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-bam•00 stars in omics-rust/rsomics-bam•00 issues in omics-rust/rsomics-bam•00 pull requests in omics-rust/rsomics-bam•Updated Aug 12, 2026Aug 12, 2026

• rsomics-cnv

  Public
  Rust

  •00 forks in omics-rust/rsomics-cnv•00 stars in omics-rust/rsomics-cnv•00 issues in omics-rust/rsomics-cnv•00 pull requests in omics-rust/rsomics-cnv•Updated Aug 12, 2026Aug 12, 2026

• rsomics-call

  Public
  Typed alignment likelihood and small-variant calling workflow

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-call•00 stars in omics-rust/rsomics-call•00 issues in omics-rust/rsomics-call•00 pull requests in omics-rust/rsomics-call•Updated Aug 12, 2026Aug 12, 2026

• rsomics-intervals

  Public
  BED algebra + interval index + GFF/GTF interval extraction for the rsomics-* tool family. Layer A primitive.

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-intervals•00 stars in omics-rust/rsomics-intervals•00 issues in omics-rust/rsomics-intervals•00 pull requests in omics-rust/rsomics-intervals•Updated Aug 12, 2026Aug 12, 2026

• rsomics-seqio

  Public
  Fast FASTQ reader for the rsomics-* tool family: decode-only producer thread + parallel parse, ISA-L igzip gz backend on Linux and a pure-Rust decoder elsewhere…

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-seqio•00 stars in omics-rust/rsomics-seqio•00 issues in omics-rust/rsomics-seqio•00 pull requests in omics-rust/rsomics-seqio•Updated Aug 12, 2026Aug 12, 2026

• rsomics-common

  Public
  Shared primitives for every rsomics-* crate (errors, CLI scaffold, runner, progress, exit codes).

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-common•00 stars in omics-rust/rsomics-common•00 issues in omics-rust/rsomics-common•00 pull requests in omics-rust/rsomics-common•Updated Aug 12, 2026Aug 12, 2026

• rsomics-pileup

  Public
  Shared pileup engine for bam-mpileup / consensus / depth tools

  Rust

  •00 forks in omics-rust/rsomics-pileup•00 stars in omics-rust/rsomics-pileup•00 issues in omics-rust/rsomics-pileup•00 pull requests in omics-rust/rsomics-pileup•Updated Aug 11, 2026Aug 11, 2026

• rsomics-seq

  Public
  Rust

  •00 forks in omics-rust/rsomics-seq•00 stars in omics-rust/rsomics-seq•00 issues in omics-rust/rsomics-seq•00 pull requests in omics-rust/rsomics-seq•Updated Aug 10, 2026Aug 10, 2026

• rsomics-bamio

  Public
  Rust

  •00 forks in omics-rust/rsomics-bamio•00 stars in omics-rust/rsomics-bamio•00 issues in omics-rust/rsomics-bamio•00 pull requests in omics-rust/rsomics-bamio•Updated Aug 3, 2026Aug 3, 2026

• rsomics-methyl

  Public
  Bisulfite-sequencing methylation extraction and bias QC in Rust

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-methyl•00 stars in omics-rust/rsomics-methyl•00 issues in omics-rust/rsomics-methyl•00 pull requests in omics-rust/rsomics-methyl•Updated Aug 3, 2026Aug 3, 2026

• rsomics-metagenomics

  Public
  Abundance-aware amplicon processing workflows

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-metagenomics•00 stars in omics-rust/rsomics-metagenomics•00 issues in omics-rust/rsomics-metagenomics•00 pull requests in omics-rust/rsomics-metagenomics•Updated Aug 2, 2026Aug 2, 2026

• rsomics-phylo

  Public
  Alignment, distance, tree inference, comparison, and phylogenetic statistics in Rust

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-phylo•00 stars in omics-rust/rsomics-phylo•00 issues in omics-rust/rsomics-phylo•00 pull requests in omics-rust/rsomics-phylo•Updated Aug 2, 2026Aug 2, 2026

• rsomics-composition

  Public
  Rust

  •00 forks in omics-rust/rsomics-composition•00 stars in omics-rust/rsomics-composition•00 issues in omics-rust/rsomics-composition•00 pull requests in omics-rust/rsomics-composition•Updated Aug 2, 2026Aug 2, 2026

• rsomics-phylo-tree

  Public
  Phylogenetic tree type + Newick parser/emitter for the rsomics-* tool family. Layer A primitive.

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-phylo-tree•00 stars in omics-rust/rsomics-phylo-tree•00 issues in omics-rust/rsomics-phylo-tree•00 pull requests in omics-rust/rsomics-phylo-tree•Updated Aug 2, 2026Aug 2, 2026

• rsomics-liftover

  Public
  Translate genomic intervals between assemblies through UCSC chain files

  Rust

  •00 forks in omics-rust/rsomics-liftover•00 stars in omics-rust/rsomics-liftover•00 issues in omics-rust/rsomics-liftover•00 pull requests in omics-rust/rsomics-liftover•Updated Aug 2, 2026Aug 2, 2026

• rsomics-count

  Public
  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-count•00 stars in omics-rust/rsomics-count•00 issues in omics-rust/rsomics-count•00 pull requests in omics-rust/rsomics-count•Updated Aug 2, 2026Aug 2, 2026

• rsomics-fastq-qc

  Public
  High-performance FASTQ quality diagnostics with FastQC-compatible reports

  rustbioinformaticsquality-control+ 2

  rustbioinformaticsquality-controlfastqfastqc

  Rust

  •00 forks in omics-rust/rsomics-fastq-qc•00 stars in omics-rust/rsomics-fastq-qc•00 issues in omics-rust/rsomics-fastq-qc•00 pull requests in omics-rust/rsomics-fastq-qc•Updated Aug 2, 2026Aug 2, 2026

• rsomics-fastq-preprocess

  Public
  Rust

  •00 forks in omics-rust/rsomics-fastq-preprocess•00 stars in omics-rust/rsomics-fastq-preprocess•00 issues in omics-rust/rsomics-fastq-preprocess•00 pull requests in omics-rust/rsomics-fastq-preprocess•Updated Aug 2, 2026Aug 2, 2026

• rsomics-annotation

  Public
  Typed GFF3 and GTF validation, selection, conversion, and sequence extraction

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-annotation•00 stars in omics-rust/rsomics-annotation•00 issues in omics-rust/rsomics-annotation•00 pull requests in omics-rust/rsomics-annotation•Updated Aug 2, 2026Aug 2, 2026

• rsomics-help

  Public
  Family-wide `--help` renderer for rsomics-* CLIs: figlet banner with gradient, section helpers, plain / JSON modes for AI consumers.

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-help•00 stars in omics-rust/rsomics-help•00 issues in omics-rust/rsomics-help•00 pull requests in omics-rust/rsomics-help•Updated Jul 31, 2026Jul 31, 2026

• rsomics-stats

  Public
  Statistical tests, FDR control, p-value combination for the rsomics-* tool family. Layer A primitive.

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-stats•00 stars in omics-rust/rsomics-stats•00 issues in omics-rust/rsomics-stats•00 pull requests in omics-rust/rsomics-stats•Updated Jul 8, 2026Jul 8, 2026

• rsomics-igzip

  Public
  Minimal Quadrant-② FFI wrapper over Intel ISA-L igzip for fast gzip decompression. Isolated unsafe surface; all consumers stay 100% safe.

  Rust

  •

  Apache License 2.0

  •00 forks in omics-rust/rsomics-igzip•00 stars in omics-rust/rsomics-igzip•00 issues in omics-rust/rsomics-igzip•00 pull requests in omics-rust/rsomics-igzip•Updated May 30, 2026May 30, 2026

• rsomics-minimap2

  Public
  Long/short-read aligner — CLI wrapper of minimap2 FFI bindings (Quadrant ②)

  Rust

  •00 forks in omics-rust/rsomics-minimap2•00 stars in omics-rust/rsomics-minimap2•00 issues in omics-rust/rsomics-minimap2•00 pull requests in omics-rust/rsomics-minimap2•Updated May 30, 2026May 30, 2026