Issues

• MAINT: Remove antiquated parameter validation

  qiime2/q2-dada2#201 · Filter by author colinvwood opened on Oct 6, 2026
  1

• dada2 version; learnErrors() option nreads; q2-dada2 option --p-n-reads-learn

  good first issue
  qiime2/q2-dada2#186 · Filter by author Phylloxera opened on Aug 26, 2025
  6

• refactor for improved testing of parameter settings

  qiime2/q2-dada2#182 · Filter by author gregcaporaso opened on Jun 25, 2025

• IMP: restructure dada2 invocation from R script to rpy2

  qiime2/q2-dada2#172 · Filter by author colinvwood opened on Dec 3, 2024
  4

  

• BUG:Can not run qiime dada2 denoise-ccs without primers or adapters

  qiime2/q2-dada2#163 · Filter by author cherman2 opened on Dec 11, 2023
  9

  

• Improved error reporting for malformed paired-end reads

  qiime2/q2-dada2#97 · Filter by author ConstantinoSchillebeeckx opened on Apr 24, 2018

• denoise-*: expose --collapse-no-mismatch parameter

  qiime2/q2-dada2#92 · Filter by author nbokulich opened on Mar 22, 2018
  10

  

• Add an explicit error for return code -9

  enhancement
  qiime2/q2-dada2#86 · Filter by author ebolyen opened on Jan 29, 2018
  4

• Split filtering into its own command?

  question
  qiime2/q2-dada2#51 · Filter by author benjjneb opened on Mar 12, 2017
  7