Issues

• MAINT: deprecate FeatureTable[Normalized] type

  qiime2/q2-types#384 · Filter by author VinzentRisch opened on Feb 9, 2026
  7

• Make Partitioners More Generic

  qiime2/q2-types#381 · Filter by author Oddant1 opened on Jan 7, 2026
  1

• identifiers are being parsed as feature labels in various visualizations

  qiime2/q2-types#337 · Filter by author ebolyen opened on Jul 11, 2024
  1

• MAINT: Implement a validation method for the OrthologFileFmt

  qiime2/q2-types#321 · Filter by author Sann5 opened on Apr 18, 2024
  5

  

• FEAT: Importing multiplexed paired-end data with separated barcode sequence files

  qiime2/q2-types#300 · Filter by author Keegan-Evans opened on Mar 21, 2023
  1

  

• add usage examples to artifact classes

  good first issue
  qiime2/q2-types#288 · Filter by author gregcaporaso opened on Dec 2, 2022
  1

• Conflict with biom-format 2.1.12

  qiime2/q2-types#279 · Filter by author tillea opened on Jul 18, 2022

• ENH: new type + format for BLASTDB v5

  qiime2/q2-types#275 · Filter by author nbokulich opened on May 17, 2022

• Transformer from Newick to dendropy

  qiime2/q2-types#269 · Filter by author chrysn opened on Mar 10, 2022
  1

• Change Newick validation from sniff to validate

  qiime2/q2-types#247 · Filter by author ChrisKeefe opened on Jun 10, 2020
  1

• Importing manifest v1 without sample names produce unclear error

  qiime2/q2-types#229 · Filter by author ChrisKeefe opened on Sep 23, 2019
  1

• PHRED64 variants of Multiplexed*EndBarcodeInSequence

  qiime2/q2-types#225 · Filter by author colinbrislawn opened on Aug 18, 2019
  1

• Validate that per-sample-seqs sets aren't empty

  qiime2/q2-types#206 · Filter by author thermokarst opened on Mar 21, 2019

• CRLF line endings + fasta (or other text file formats?) = big headache

  qiime2/q2-types#205 · Filter by author nbokulich opened on Mar 6, 2019

• BUG: SampleData[AlphaDiversity] -> Metadata doesn't work with tuples

  bug-sev:3|mediumbug-type:3|stops-worklang:pythonscope:2|most-projectssrc:forumtype:bugtype:discussion
  qiime2/q2-types#200 · Filter by author thermokarst opened on Nov 14, 2018
  1

• DNAFASTAFormat and AlignedDNAFASTAFormat should check for duplicate ids during full validation

  qiime2/q2-types#198 · Filter by author gregcaporaso opened on Nov 6, 2018

• Support FASTA files which contain all reads per sample (i.e. not just representative seqs)

  qiime2/q2-types#197 · Filter by author cduvallet opened on Nov 5, 2018

• Feature table IDs not guaranteed to work with Metadata IDs

  qiime2/q2-types#180 · Filter by author thermokarst opened on May 16, 2018

• Support transforming QIIME1DemuxDirFmt to SingleLanePerSampleSingleEndFastqDirFmt

  qiime2/q2-types#176 · Filter by author thermokarst opened on Mar 28, 2018
  1

• Support OrdinationFormat -> pd.Dataframe transformation

  good first issueHacktoberfest
  qiime2/q2-types#175 · Filter by author thermokarst opened on Mar 20, 2018

• CasavaOneEightLanelessPerSampleDirFmt creates an invalid MANIFEST on import

  type:bug
  qiime2/q2-types#172 · Filter by author thermokarst opened on Mar 7, 2018
  4

• scikit-bio based sniffers handle compression transparently

  type:bug
  qiime2/q2-types#171 · Filter by author ebolyen opened on Feb 27, 2018
  1

• have taxonomy format -> Metadata transformers infer column types

  enhancementmetadata
  qiime2/q2-types#168 · Filter by author jairideout opened on Feb 5, 2018

• Commas in Sample IDs break the internal manifests for per-sample fastq formats

  type:bug
  qiime2/q2-types#157 · Filter by author thermokarst opened on Nov 9, 2017
  4

• Normalization not applied to BIOMV210Format files on import

  type:bug
  qiime2/q2-types#145 · Filter by author thermokarst opened on Sep 5, 2017