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  1. NygenAnalytics/scarf NygenAnalytics/scarf Public

    Memory-efficient analysis of single-cell data.

    Python 125 18

  2. NygenAnalytics/CyteArc NygenAnalytics/CyteArc Public

    Fast, out-of-core single-cell analysis in Python for RNA, ATAC, protein, and multi-omic data, scaling to 100M+ cells. Mount remote datasets, work within a memory budget, and trace every result thro…

    Python 3 2

  3. pachterlab/edgePython pachterlab/edgePython Public

    Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count data.

    Python 103 9