All pull requests

Pull requests

• Created wfmash-legacy (0.14) as a plugin

  #409·pjotrp opened Sep 26, 2026Collaborator·

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• Fix with faigz

  #383·ekg opened Aug 8, 2025Collaborator·

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• Fix mapping truncation issue with nested taskflow subflows

  #382·ekg opened Aug 8, 2025Collaborator·

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• Fix mapping truncation by flattening taskflow and using static thread-local readers

  #381·ekg opened Aug 7, 2025Collaborator·

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• Add ANI estimation support for alignment-only mode

  #380·AndreaGuarracino opened Aug 5, 2025Member·

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• Implement work-stealing with subflows for mapping phase

  #379·ekg opened Aug 3, 2025Collaborator·

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• Fix deadlock by using a dedicated executor for fragment batches

  #378·unavailable-2374 opened Aug 1, 2025Contributor·

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• fix stdout flush && high-concurrency

  #376·unavailable-2374 opened Aug 1, 2025Contributor·

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  2

• update defaults for sketch density, block length, scaffolding

  #368·ekg opened Jul 6, 2025Collaborator·

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• modify -H parameter to set minimum hits floor with default 4

  #359·ekg opened May 8, 2025Collaborator·

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• Flat index thin map

  #358·ekg opened May 6, 2025Collaborator·

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• Refactor filterSubsetMappings to not merge if we don't want to merge

  #357·AndreaGuarracino opened May 5, 2025Member·

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• Reduce memory usage by clearing vectors as we go, also minor fixes

  #356·RedPenguin100 opened May 2, 2025·

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  4

• Flat index

  #355·ekg opened May 1, 2025Collaborator·

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• Add configurable chunk size for merging fragment mappings

  #349·ekg opened Apr 11, 2025Collaborator·

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• Dynamic indicators

  #337·ekg opened Mar 26, 2025Collaborator·

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• break if both fwd and rev alignments are not okay

  #289·ASLeonard opened Oct 29, 2024Contributor·

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  7

• Use multiset jaccard

  #278·bkille opened Oct 4, 2024Contributor·

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