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Added Microscopy Image Browser 3 (MIB3) entry with details.
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🟢 Approval recommended
The entry is correctly placed and its documented capabilities are supported by the project’s implementation.
0 open findings
What changed in this PR
Adds Microscopy Image Browser 3 to the graphical Zarr viewer index.
Changes:
- Documents MIB3’s OME-Zarr viewing, conversion, and large-data segmentation capabilities.
- Links to the MIB3 website with a logo.
| File | Description |
|---|---|
resources/tools/index.md |
Adds the MIB3 tool entry. |
🧠 Review effort: Balanced
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lubianat
requested changes
Oct 11, 2026
| | FIJI (ome-zarr-fiji) | [<img src="https://www.google.com/s2/favicons?sz=256&domain_url=https://fiji.sc/" alt="FIJI logo" width="30" height="30">](https://github.com/BioImageTools/ome-zarr-fiji-java) | ome-zarr-fiji is a [FIJI](https://fiji.sc/) plug-in offering drag & drop / copy & paste handlers for OME-Zarrs data.| | ||
| | ITKWidgets | [<img src="https://raw.githubusercontent.com/InsightSoftwareConsortium/itkwidgets/main/docs/_static/itkwidgets_logo.png" alt="ITKWidgets logo" width="30" height="30">](https://github.com/InsightSoftwareConsortium/itkwidgets) | Python tool for interactively viewing images (ex. in Jupyter) | | ||
| | Kiln | [<img src="https://github.githubassets.com/favicons/favicon.svg" alt="kiln logo" width="30" height="30">](https://github.com/MPanknin/kiln-render) | A WebGPU-native out-of-core rendering system for virtualized volumetric data | | ||
| | Microscopy Image Browser 3 (MIB3) | [<img src="https://www.google.com/s2/favicons?sz=256&domain_url=https://mib.helsinki.fi" alt="MIB logo" width="30" height="30">](https://mib.helsinki.fi) | Desktop application (MATLAB or standalone) for segmentation and analysis of multidimensional microscopy data. Opens local or remote OME-Zarr v2/v3, converts images to OME-Zarr, and segments OME-Zarr v3 pyramids larger than RAM directly from disk | |
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Suggested change
| | Microscopy Image Browser 3 (MIB3) | [<img src="https://www.google.com/s2/favicons?sz=256&domain_url=https://mib.helsinki.fi" alt="MIB logo" width="30" height="30">](https://mib.helsinki.fi) | Desktop application (MATLAB or standalone) for segmentation and analysis of multidimensional microscopy data. Opens local or remote OME-Zarr v2/v3, converts images to OME-Zarr, and segments OME-Zarr v3 pyramids larger than RAM directly from disk | | |
| | Microscopy Image Browser 3 (MIB3) | [<img src="https://www.google.com/s2/favicons?sz=256&domain_url=https://mib.helsinki.fi" alt="MIB logo" width="30" height="30">](https://mib.helsinki.fi) | Desktop application (MATLAB or standalone) for segmentation and analysis of multidimensional microscopy data. Opens local or remote Zarr v2/v3, converts images to OME-Zarr, and segments OME-Zarr pyramids larger than RAM directly from disk | |
Thanks! As a small note, Zarr is in v3 but the OME part of it is still pre-1.0. OME-Zarr 0.5 introduced support for v3.
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Added Microscopy Image Browser 3 (MIB3) entry with details.