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Add MIB3 to tools index #630

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Add MIB3 to tools index #630

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1 change: 1 addition & 0 deletions resources/tools/index.md
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Expand Up @@ -40,6 +40,7 @@ Want to view a Zarr? Use one of these.
| FIJI (ome-zarr-fiji) | [<img src="https://www.google.com/s2/favicons?sz=256&domain_url=https://fiji.sc/" alt="FIJI logo" width="30" height="30">](https://github.com/BioImageTools/ome-zarr-fiji-java) | ome-zarr-fiji is a [FIJI](https://fiji.sc/) plug-in offering drag & drop / copy & paste handlers for OME-Zarrs data.|
| ITKWidgets | [<img src="https://raw.githubusercontent.com/InsightSoftwareConsortium/itkwidgets/main/docs/_static/itkwidgets_logo.png" alt="ITKWidgets logo" width="30" height="30">](https://github.com/InsightSoftwareConsortium/itkwidgets) | Python tool for interactively viewing images (ex. in Jupyter) |
| Kiln | [<img src="https://github.githubassets.com/favicons/favicon.svg" alt="kiln logo" width="30" height="30">](https://github.com/MPanknin/kiln-render) | A WebGPU-native out-of-core rendering system for virtualized volumetric data |
| Microscopy Image Browser 3 (MIB3) | [<img src="https://www.google.com/s2/favicons?sz=256&domain_url=https://mib.helsinki.fi" alt="MIB logo" width="30" height="30">](https://mib.helsinki.fi) | Desktop application (MATLAB or standalone) for segmentation and analysis of multidimensional microscopy data. Opens local or remote OME-Zarr v2/v3, converts images to OME-Zarr, and segments OME-Zarr v3 pyramids larger than RAM directly from disk |

@lubianat lubianat Oct 11, 2026

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| Microscopy Image Browser 3 (MIB3) | [<img src="https://www.google.com/s2/favicons?sz=256&domain_url=https://mib.helsinki.fi" alt="MIB logo" width="30" height="30">](https://mib.helsinki.fi) | Desktop application (MATLAB or standalone) for segmentation and analysis of multidimensional microscopy data. Opens local or remote OME-Zarr v2/v3, converts images to OME-Zarr, and segments OME-Zarr v3 pyramids larger than RAM directly from disk |
| Microscopy Image Browser 3 (MIB3) | [<img src="https://www.google.com/s2/favicons?sz=256&domain_url=https://mib.helsinki.fi" alt="MIB logo" width="30" height="30">](https://mib.helsinki.fi) | Desktop application (MATLAB or standalone) for segmentation and analysis of multidimensional microscopy data. Opens local or remote Zarr v2/v3, converts images to OME-Zarr, and segments OME-Zarr pyramids larger than RAM directly from disk |

Thanks! As a small note, Zarr is in v3 but the OME part of it is still pre-1.0. OME-Zarr 0.5 introduced support for v3.

| Microscopy Nodes |[![image](https://github.githubassets.com/favicons/favicon.svg)](https://github.com/aafkegros/MicroscopyNodes) | [Blender](https://www.blender.org/) add-on for visualizing high-dimensional microscopy data |
| napari | [<img src="https://www.google.com/s2/favicons?sz=256&domain_url=https://napari.org/" alt="napari logo" width="30" height="30">](https://github.com/ome/napari-ome-zarr) | [napari](https://napari.org/) plug-in for viewing Zarr |
| Neuroglancer | [<img src="https://www.google.com/s2/favicons?sz=256&domain_url=https://google.com" alt="Neuroglancer logo" width="30" height="30">](https://github.com/google/neuroglancer) | A browser-based volume viewer |
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